PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006126.1_g000010.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 477aa MW: 51913.6 Da PI: 7.1422

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006126.1_g000010.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	6e-17	151	200	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Rmu_sc0006126.1_g000010.1 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 200 78*****************......55**********************997 PP
2	AP2	40.1	9.2e-13	243	293	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g Rmu_sc0006126.1_g000010.1 243 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 293 79******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MLDLNLSVLG SSSEQNDVFV VGSFPEGSGS ATQMDESGTS NSSVVNADAS STNDDSCSAR 60 AAVTTFNFDI LKVGGGEEDD VAVTKELFPV NSWPGKGQGQ QYSPASSSAR HNLIELGGPA 120 EVQQKQPQPP PPPPQQPQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG 180 FDTAHAAARA YDRAAIKFRG VDADINYNLS DYEEDMKQMK NLTKEEFVHI LRRQSTGFSR 240 GSSRYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA ARAYDKAAIK CNGREAVTNF 300 EASTYEGEMI SDAVNEDGNH NLDLNLGISP PSFGNGQKQG EGHLQFHSGP YEGQNGKNMR 360 MVPNANATMT APPFRGVIMT SEHPPLWNGV YPSFLPNQER AIEKRIALGS QGPPNWAWQM 420 HGQVSAPMPL FSTAASSGFS FTATTPSAAV LPIIPSNPTA LNLCFTSSAT AAHHTSQ

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MLDLNLSVLG SSSEQNDVFV VGSFPEGSGS ATQMDESGTS NSSVVNADAS STNDDSCSAR  60
AAVTTFNFDI LKVGGGEEDD VAVTKELFPV NSWPGKGQGQ QYSPASSSAR HNLIELGGPA  120
EVQQKQPQPP PPPPQQPQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG  180
FDTAHAAARA YDRAAIKFRG VDADINYNLS DYEEDMKQMK NLTKEEFVHI LRRQSTGFSR  240
GSSRYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA ARAYDKAAIK CNGREAVTNF  300
EASTYEGEMI SDAVNEDGNH NLDLNLGISP PSFGNGQKQG EGHLQFHSGP YEGQNGKNMR  360
MVPNANATMT APPFRGVIMT SEHPPLWNGV YPSFLPNQER AIEKRIALGS QGPPNWAWQM  420
HGQVSAPMPL FSTAASSGFS FTATTPSAAV LPIIPSNPTA LNLCFTSSAT AAHHTSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-121	AP2 family protein