PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005750.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 340aa    MW: 37818.1 Da    PI: 7.405
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005750.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.6e-171461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEd +lv +++++G+g+W+++++  g+ R+ k+c++rw +yl
  Rmu_sc0005750.1_g000003.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPANTGLLRCSKSCRLRWTNYL 61
                               79******************************99************97 PP
2Myb_DNA-binding45.71.5e-1467112148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg++T+ E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Rmu_sc0005750.1_g000003.1  67 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112
                                89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MGRPPCCEKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRAV PANTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKIQ  120
SAVDHHHQQQ PQAQNNILGS SISDSTTSNS THHQYPHRNN VNDITSHAST TTLSLRSINQ  180
SSSSGGIYAS STENISRLLE GWMRTSPKST NANLVTKPSH DREENPKGGQ DQDEGCDHDL  240
LSHEAFESIL SFDNLNNVNA ASWDRSSTTN CDSSSIKQVS QTQCSTAAAI ANEKDKHIIR  300
ACESTNTPPL SFLEKWLLDE SAAGQVLEDR MMELSPISLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.15e-96MYB family protein