PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005599.1_g000031.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 761aa MW: 87322.9 Da PI: 8.2802

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005599.1_g000031.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.4	6.4e-15	38	111	1	72
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 +fYn+YAk +GF+vr+++++ s +r+g++t+ ++vCs +gkr+ee + +++ rr+++etr +C + +k++++ Rmu_sc0005599.1_g000031.1 38 SFYNAYAKAMGFDVRNDYKRLStRRTGRVTSLRLVCSAQGKRREEYMSnKKRVRRPKKETRFNCSCLFKLRNKV 111 5**************99988799**************9988845677889*********9998875 PP

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence
MSNGSDNNEM QYKGVQYDKL CTEDLKGQEF KTVEEVESFY NAYAKAMGFD VRNDYKRLST 60 RRTGRVTSLR LVCSAQGKRR EEYMSNKKRV RRPKKETRFN CSCLFKLRNK VVEEDFKSNN 120 SSHVLTYSLQ KLEHHAGTMF TDSMFEHVHN EIDGVGDLIT SRTMVFGSSR VYFASSYNDN 180 KQETEYTTVY YPDENNPRME CSSNFVYVLI FVRKIQADEL IACGKNVKKD NEFKKLVASK 240 WHTLTPTEKA KYSIPGPDVS SGIIKKSRNT SKSSVTISIQ CSPHQFQQVV SKFSGEQIAA 300 ITEQGFGMLV KFSCTRVRRD LCRFLIDKFD TKECLIELHG KSMKVSSSDF KQIMSIPKGG 360 TDVDFSGSIE DPDMKALNKA KYVSGCVVFF QLYYYNVIGY GMTLVDCEKP TIAAWGEDQS 420 SKLIKWILRK GGYESPNILV SKVYNLSGQK HEAEDVVALR TYVEYVKSSI RQVEEKIDEL 480 GGLLRGIKEG LFKVVGEDSD RDVSIKRDEA NHDRKTVELS SNDTIRQNHQ ESDDFNTQSS 540 KEVEVHNESS CQIHSEEHSE AEHPKIKEEL IIGKTIGRDT KSTKFSPINT RHTADRKPSQ 600 ALSDPFVKLG IQLDDEQIDE FLHGRTLNLK RIGEFKGPFD FEDDDCDLLS KVLSTFAAKA 660 KKENKAEFRY SVFEKCEKIF IPILDKDVKG NHWFLMVVKT KSKEVEIWDS LPSRTCKTRR 720 ENLVYHLYHY VNERLRIALT LLKHPDNQAC NNIAEARQRS L

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence

MSNGSDNNEM QYKGVQYDKL CTEDLKGQEF KTVEEVESFY NAYAKAMGFD VRNDYKRLST  60
RRTGRVTSLR LVCSAQGKRR EEYMSNKKRV RRPKKETRFN CSCLFKLRNK VVEEDFKSNN  120
SSHVLTYSLQ KLEHHAGTMF TDSMFEHVHN EIDGVGDLIT SRTMVFGSSR VYFASSYNDN  180
KQETEYTTVY YPDENNPRME CSSNFVYVLI FVRKIQADEL IACGKNVKKD NEFKKLVASK  240
WHTLTPTEKA KYSIPGPDVS SGIIKKSRNT SKSSVTISIQ CSPHQFQQVV SKFSGEQIAA  300
ITEQGFGMLV KFSCTRVRRD LCRFLIDKFD TKECLIELHG KSMKVSSSDF KQIMSIPKGG  360
TDVDFSGSIE DPDMKALNKA KYVSGCVVFF QLYYYNVIGY GMTLVDCEKP TIAAWGEDQS  420
SKLIKWILRK GGYESPNILV SKVYNLSGQK HEAEDVVALR TYVEYVKSSI RQVEEKIDEL  480
GGLLRGIKEG LFKVVGEDSD RDVSIKRDEA NHDRKTVELS SNDTIRQNHQ ESDDFNTQSS  540
KEVEVHNESS CQIHSEEHSE AEHPKIKEEL IIGKTIGRDT KSTKFSPINT RHTADRKPSQ  600
ALSDPFVKLG IQLDDEQIDE FLHGRTLNLK RIGEFKGPFD FEDDDCDLLS KVLSTFAAKA  660
KKENKAEFRY SVFEKCEKIF IPILDKDVKG NHWFLMVVKT KSKEVEIWDS LPSRTCKTRR  720
ENLVYHLYHY VNERLRIALT LLKHPDNQAC NNIAEARQRS L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	66	RLSTRRTGRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-08	FAR1 family protein