PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005594.1_g000015.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 394aa    MW: 42347.7 Da    PI: 7.987
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005594.1_g000015.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-09112132526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                 C+++ + G C+yGdrCkF H+
  Rmu_sc0005594.1_g000015.1 112 VCNYWVQ-GNCSYGDRCKFLHS 132
                                6******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
MDVDGGGSKR IFTRLGGPQS DPNKNQKVCY HWRAGKCNRH PCPYLHRELP APPGGLNGTA  60
SSKRQHGFAA ATDGPSSGPR GRGPNNFNGG ASNTWGRTGG GNRVFVRKMD KVCNYWVQGN  120
CSYGDRCKFL HSWSMGDCVS LLTTLEGHQN VVSGIALPSG SDKLYTGSKD ETVRVWDCQS  180
GQCLGVINLG GEVGCMISEG PWVFVGIPNA VKAWNTQANS EMSLSGPVGQ VYAMVVGNDL  240
LFAGTQDGSI LAWKFNTVSN CFEPAYSLNG HTLAVVSLVV GANRLYSGSM DHSIRIWAAT  300
QSGNLEVTYT HEEDHPLLTL CGMHDSEAKP VLLSACNDNT VRLYDLPSFS ERGKIFSKQE  360
IRAIQVGPGG LFFTGDGTGQ VRVWKWLAEP VAAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0C3H family protein