PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G25440.1
Common NameT30C3.6, ZFWD1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 430aa    MW: 46661.8 Da    PI: 7.3595
Description zinc finger WD40 repeat protein 1
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G25440.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08105127326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  ++lC+f+   G C+yGd+C++ H+
  AT4G25440.1 105 EKLCKFWVD-GNCPYGDKCRYLHC 127
                  579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.852652IPR000571Zinc finger, CCCH-type
SMARTSM003560.0852851IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685102129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-6102126IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-6104128IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6105127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-7106124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.8E-17125238IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.01E-45133424IPR017986WD40-repeat-containing domain
SMARTSM003203.9E-6133172IPR001680WD40 repeat
PfamPF004001.9E-4136172IPR001680WD40 repeat
PROSITE profilePS5029420.962140342IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.316140181IPR001680WD40 repeat
PRINTSPR003204.7E-6159173IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780159173IPR019775WD40 repeat, conserved site
SMARTSM003202.4212249IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.106.2E-31239423IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.55256293IPR001680WD40 repeat
PROSITE profilePS5008211.11263302IPR001680WD40 repeat
PRINTSPR003204.7E-6280294IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4296333IPR001680WD40 repeat
PfamPF004000.0028298332IPR001680WD40 repeat
PRINTSPR003204.7E-6320334IPR020472G-protein beta WD-40 repeat
SMARTSM0032014337380IPR001680WD40 repeat
SMARTSM003202.8383420IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0005352anatomyxylem
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDLDMNGGNK RVFQRLGGGS NRPTTDSNQK VCFHWRAGRC NRYPCPYLHR ELPGPGSGPV  60
AASSNKRVAD ESGFAGPSHR RGPGFSGTAN NWGRFGGNRT VTKTEKLCKF WVDGNCPYGD  120
KCRYLHCWSK GDSFSLLTQL DGHQKVVTGI ALPSGSDKLY TASKDETVRI WDCASGQCTG  180
VLNLGGEVGC IISEGPWLLV GMPNLVKAWN IQNNADLSLN GPVGQVYSLV VGTDLLFAGT  240
QDGSILVWRY NSTTSCFDPA ASLLGHTLAV VSLYVGANRL YSGAMDNSIK VWSLDNLQCI  300
QTLTEHTSVV MSLICWDQFL LSCSLDNTVK IWAATEGGNL EVTYTHKEEY GVLALCGVHD  360
AEAKPVLLCS CNDNSLHLYD LPSFTERGKI LAKQEIRSIQ IGPGGIFFTG DGSGQVKVWK  420
WSTESTPILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-201374238323Tako8
6g6n_A1e-201374238323Tako8
6g6n_B1e-201374238323Tako8
6g6n_C1e-201374238323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.322550.0flower
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT4G25440
AtGenExpressAT4G25440
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G25440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q9FNZ2
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G25440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520630.0AJ252063.1 Arabidopsis thaliana partial mRNA for zfwd1 protein (zfwd1 gene).
GenBankBT0261220.0BT026122.1 Arabidopsis thaliana.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001328956.10.0zinc finger WD40 repeat protein 1
RefseqNP_001328957.10.0zinc finger WD40 repeat protein 1
RefseqNP_194274.20.0zinc finger WD40 repeat protein 1
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A178V1120.0A0A178V112_ARATH; ZFWD1
STRINGAT4G25440.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Representative plantOGRP10651624
Publications ? help Back to Top
  1. Terol J,Bargues M,P
    ZFWD: a novel subfamily of plant proteins containing a C3H zinc finger and seven WD40 repeats.
    Gene, 2000. 260(1-2): p. 45-53
    [PMID:11137290]
  2. Zhao C,Craig JC,Petzold HE,Dickerman AW,Beers EP
    The xylem and phloem transcriptomes from secondary tissues of the Arabidopsis root-hypocotyl.
    Plant Physiol., 2005. 138(2): p. 803-18
    [PMID:15923329]
  3. Alonso-Blanco C, et al.
    Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis.
    Plant Physiol., 2005. 139(3): p. 1304-12
    [PMID:16244146]
  4. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  5. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  6. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]