PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005478.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 434aa    MW: 49286.6 Da    PI: 4.223
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005478.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.24.6e-21151492128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknr 76 
                                 pG rF P d+elv +yLk+ ++g++++  +  + ++d+y   ePw++ +++k+        +k++yfF++++k ++t+kr +r
  Rmu_sc0005478.1_g000002.1  15 LPGQRFCPMDDELVLFYLKPMLSGQNVPGRNRvVFDCDLYGQqEPWEIWETFKTrrphdlrLNKDIYFFTQHKKMSSTDKRVRR 98 
                                59************************8775544999**996549****753333234333334588****************** PP

                        NAM  77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 + sg+Wk   + k+v s  +g +vglkk  ++ +  + + ++  W++ e+ l
  Rmu_sc0005478.1_g000002.1  99 NVGSGTWKGDDSGKPVRSVdSGCVVGLKKRYTYKN--EDSVHNGCWILYEFYL 149
                                ********9999999998867788********984..4555699******976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    
MQQEFLMEES RGNQLPGQRF CPMDDELVLF YLKPMLSGQN VPGRNRVVFD CDLYGQQEPW  60
EIWETFKTRR PHDLRLNKDI YFFTQHKKMS STDKRVRRNV GSGTWKGDDS GKPVRSVDSG  120
CVVGLKKRYT YKNEDSVHNG CWILYEFYLD RSLRDKKQKV KDCVLCLLRK NGEPKTKIEK  180
KRKQREEEQF LENNYACDDG ENSNREQEVL LEPQVKRQRT LPSIDNAPPT MPSEDYAAFA  240
AELEESLECS EDDNAPSSEA EAVGLQGEEN GGLQKLASEG QSSGPSFVDD YGIFNPLPKE  300
DFLWEGMVEE MGTVEKEEPV LNGVSSNIDV AEDNAVNSTL LYAPTSSMSV ASDGCTDMPY  360
LSENCCIDPS GSNNVCGGSI GLQDASYWLE SLVEVPTDEQ QKTADEDCSD WLESMINFSP  420
EENNFFWSEM QWCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174183PKTKIEKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-14NAC family protein