PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004947.1_g000027.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 249aa MW: 27889.2 Da PI: 5.3746

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004947.1_g000027.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+ + +G +W+++++ g++R++k+c++rw +yl Rmu_sc0004947.1_g000027.1 14 KGPWTAEEDKKLVNFILTHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49.4	1e-15	72	111	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + E++l +d+++ lG++ W++Ia++++ gRt++++k++w+++ Rmu_sc0004947.1_g000027.1 72 EAEEQLVIDLHASLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111 67*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MGRQPCCDKL GVKKGPWTAE EDKKLVNFIL THGQCCWRAV PKLAGLRRCG KSCRLRWTNY 60 LRPDLKRGLL NEAEEQLVID LHASLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIKMG 120 IDPITHAPLQ KQVTTTPQET PCEANIQQSV NIPEHGVSSN ENGSSATENS SSNEAQSLIE 180 VNANGDDDPL VNYILSDTFL QDWSWNFPAV EDNYSDLGLS STSSEDSSAW FMDCKDFGVE 240 DFELGNCIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12350.1	2e-86	MYB family protein