PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004920.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-YC

Protein Properties

Length: 637aa MW: 70703.8 Da PI: 6.3702

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004920.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.5	1.4e-18	298	380	16	98
NF-YC 16 fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki+++dedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v+ +fdfl div + Rmu_sc0004920.1_g000001.1 298 KLDTRFPAARIKKIMQTDEDVGKIALAVPLLVSKALELFLQDLCDRTYDITLKRGAKTMNSLHLKQCVKTFSVFDFLKDIVSK 380 44789***************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence
MFLWQRFGLG LEDGGGISKQ TDQSRYVLLG SGMRARVEQR WGGVCRRRGM ASSVHLGSGQ 60 WLGLRFRTLL GIGGICIAAR WCSKGWMQRG WVMAHGGCWV HGGSGGWARL MLWGLAGGFW 120 SLGMVGVSCF SQEFNSLFCG QSNGEKLLHM IWRFWVMVLK GVAFFLRLAV RMCFVSWVSM 180 AEVLWIWCYF RGLYVLLSML SCGQCGCHLL LHVVWLVWVT VLMKGKWLFV MLAAGINRDS 240 RKWFYGVARV EGRLGWLGVG PFWLMDVIVD DGPVTEVVLR EESGEFMSTT EFDTMRKKLD 300 TRFPAARIKK IMQTDEDVGK IALAVPLLVS KALELFLQDL CDRTYDITLK RGAKTMNSLH 360 LKQCVKTFSV FDFLKDIVSK VPDLGGSDAV GEECPVAKRR KVAADDEDTE SDDETKRGKM 420 TNDAGNTVGS GRGRGRGRGR GRKAVADDED TDTDDESKTS LMVHDAGNTI GSGRGRGRGR 480 GRPRGRPRGS RTAGREISAA NEKYEDDLEI DKHEDKLDEP LELLDDATEP KGSKENASGD 540 NSAETAARNF DLNVDLNENE DSTTTSAAIP GPVPAPAPAP VPDPVPANQL SQFTPDMKHV 600 EFLGWPLTGM EKMAIDPMQL ANLTRRIDEE DEDYDED

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence

MFLWQRFGLG LEDGGGISKQ TDQSRYVLLG SGMRARVEQR WGGVCRRRGM ASSVHLGSGQ  60
WLGLRFRTLL GIGGICIAAR WCSKGWMQRG WVMAHGGCWV HGGSGGWARL MLWGLAGGFW  120
SLGMVGVSCF SQEFNSLFCG QSNGEKLLHM IWRFWVMVLK GVAFFLRLAV RMCFVSWVSM  180
AEVLWIWCYF RGLYVLLSML SCGQCGCHLL LHVVWLVWVT VLMKGKWLFV MLAAGINRDS  240
RKWFYGVARV EGRLGWLGVG PFWLMDVIVD DGPVTEVVLR EESGEFMSTT EFDTMRKKLD  300
TRFPAARIKK IMQTDEDVGK IALAVPLLVS KALELFLQDL CDRTYDITLK RGAKTMNSLH  360
LKQCVKTFSV FDFLKDIVSK VPDLGGSDAV GEECPVAKRR KVAADDEDTE SDDETKRGKM  420
TNDAGNTVGS GRGRGRGRGR GRKAVADDED TDTDDESKTS LMVHDAGNTI GSGRGRGRGR  480
GRPRGRPRGS RTAGREISAA NEKYEDDLEI DKHEDKLDEP LELLDDATEP KGSKENASGD  540
NSAETAARNF DLNVDLNENE DSTTTSAAIP GPVPAPAPAP VPDPVPANQL SQFTPDMKHV  600
EFLGWPLTGM EKMAIDPMQL ANLTRRIDEE DEDYDED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	432	441	RGRGRGRGRG
2	432	442	RGRGRGRGRGR
3	474	484	RGRGRGRGRGR
4	476	486	RGRGRGRGRGR
5	478	488	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	2e-49	NF-YC family protein