PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004821.1_g000010.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 545aa MW: 61926.3 Da PI: 9.2702

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004821.1_g000010.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.1	9.3e-21	50	135	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 Y+eY+ ++GFsvr+ + +k+ n+ +++ +++Cskeg++ +++ + e ++ r rtgC+ak++ +++++ w+ t ++ eH Rmu_sc0004821.1_g000010.1 50 HYCEYGARMGFSVRIMQRRKT--NNVVKQVNYCCSKEGFKLDSDPS-EVKKADRLDIRTGCTAKIRFGLQDNNLWKATLFVPEH 130 69************98888..889************9999.99999**************************** PP FAR1 86 nHela 90 nH+la Rmu_sc0004821.1_g000010.1 131 NHKLA 135 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MPTLIDIEDD GEHSMGTALG KDSMFVNRQT SNDDDLYGVI VNSEEEAYNH YCEYGARMGF 60 SVRIMQRRKT NNVVKQVNYC CSKEGFKLDS DPSEVKKADR LDIRTGCTAK IRFGLQDNNL 120 WKATLFVPEH NHKLAELEER QFLRSNRKVS NAHQGVIRSM KTAGMSTINT YSYLAEEVGG 180 SQNVGFTKTD YYNFKLLFRR VTEDEFESTW DEIIQKFDLA GNTWLQTLYN LREKWCALFS 240 KDTFSAGILS TQRSESTNNV FTLMSTKTLS LTEFVHHYDK QAEQMRSSEL EETFRCNNGI 300 PTRAAKSSGI KKQAGMVYTR KIYNLFEFEF IASLAVKMEE VGSDGTLQTF ELNEEGHKRV 360 YIVQFNSSNL TISCSCQMYE SMGWLCRHAL RVLNVKNITQ IPIQYILKRW TKDAKKGVEA 420 NSVPVQVKEK TTVTLRRNTL MRKAYSIISK GAETTSGSEI AMQKLKEAEE LIKKNMKNLS 480 IAGVLKVSCT NASASGANKN DTSFEETPVL NPAGVWPKGI SNKRRKDEME KKQNKKAPKS 540 QGSSK

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MPTLIDIEDD GEHSMGTALG KDSMFVNRQT SNDDDLYGVI VNSEEEAYNH YCEYGARMGF  60
SVRIMQRRKT NNVVKQVNYC CSKEGFKLDS DPSEVKKADR LDIRTGCTAK IRFGLQDNNL  120
WKATLFVPEH NHKLAELEER QFLRSNRKVS NAHQGVIRSM KTAGMSTINT YSYLAEEVGG  180
SQNVGFTKTD YYNFKLLFRR VTEDEFESTW DEIIQKFDLA GNTWLQTLYN LREKWCALFS  240
KDTFSAGILS TQRSESTNNV FTLMSTKTLS LTEFVHHYDK QAEQMRSSEL EETFRCNNGI  300
PTRAAKSSGI KKQAGMVYTR KIYNLFEFEF IASLAVKMEE VGSDGTLQTF ELNEEGHKRV  360
YIVQFNSSNL TISCSCQMYE SMGWLCRHAL RVLNVKNITQ IPIQYILKRW TKDAKKGVEA  420
NSVPVQVKEK TTVTLRRNTL MRKAYSIISK GAETTSGSEI AMQKLKEAEE LIKKNMKNLS  480
IAGVLKVSCT NASASGANKN DTSFEETPVL NPAGVWPKGI SNKRRKDEME KKQNKKAPKS  540
QGSSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	9e-44	FAR1 family protein