PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004527.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 1127aa    MW: 124766 Da    PI: 6.6641
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004527.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.81.6e-21134235199
                                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                f+k+lt sd++++g +++p++ ae++      +++++  ++l  +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD
  Rmu_sc0004527.1_g000004.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfNMQPPA-QELAARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGD 216
                                99*****************************9555544.48******************************************* PP

                                EEEEEE-SSSEE..EEEEE-S CS
                         B3  79 fvvFkldgrsefelvvkvfrk 99 
                                 v+F   ++++++l+++++r+
  Rmu_sc0004527.1_g000004.1 217 AVLFI--RDEKQQLLLGIRRA 235
                                *****..5688889****997 PP
2Auxin_resp118.74.6e-39260343183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Rmu_sc0004527.1_g000004.1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCaNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 343
                                79*******************************99779********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1127 aa     Download sequence    
MKQPANGVSS GAAALNSGEG GENVKIINPE LWQACAGPLV NLPPAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP SFDKDALLRS  120
DLALKSNKPQ PEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFNMQPP AQELAARDLH  180
DTVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDAVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVCANQLS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPPPFFRS KRPRQPGMPD DESSDLDNLF KRTMPWLGDD MCMKDPQVLP  420
GLSLVQWMNM QQNSSVASSM QPNYMHPSFS GSVMQNLAGV DLSRQMGLSA PQIPQPNNLQ  480
FNAQRLPQQV QQLDQLPNMQ SNVNPIASMV QRQQQLGDMT QVPRQNLVNQ SLPSSQAQSP  540
LLQPQSLAQA NSILQQQSST QNQLQRNLPQ NLQQHQQQQQ QQQHQQQQQH QQQNVGQNQQ  600
QNFIQTPQPD QLNQQLHHLS DNPLQLQLLQ KLQQHQQSYL AQQALQQQPT QLLQLQDQQR  660
HLLDASQSFP RPSTPSQMQD MPLSAPTSHP QSRAMPQQMT VNNISQPSGR FLHPQPQPKV  720
QQQQPGMLAE MSGHMGLPPT GTTNQLSRAG SGIMAGVAGA GQSGLTDEVP SCSTSPSTNN  780
CPTVIQPLMN NRGHRNSLTG EDMAQSANMV ISSSALETMP SNGNLVKGFQ HKSEVKPSVN  840
ITRNQSQGML NPQTYLNGAA AQTDYLDTSS STTSAGLSQN DVHLQHNNTP LTFNPQSMLF  900
REPSQEVEVQ VDQRNNVSYG SNIDSQLGIP LSSDPLLEKG MVGIGKDFTN NLSSGMLGNF  960
ENSKDAQQEL SSSMVSQSFG VPDMTFQSID STINDSSFLD SAPWAPAAQF QRMRTYTKVY  1020
KRGAVGRSID ITRYSGYDEL KHDLARRFGI EGQLEDRGRV GWKLVYVDHE SDVLLVGDDP  1080
WEEFVNCVRC IKILSPQEVQ QMSLDGDFGG NAVLPNQACS SSDGGNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein