PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004359.1_g000048.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 296aa    MW: 33434.5 Da    PI: 6.9902
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004359.1_g000048.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32.1e-141461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT+ Ed  l +++k +G g+W+  +++ g++R++k+c++rw++yl
  Rmu_sc0004359.1_g000048.1 14 RGAWTALEDRDLTEYIKVHGEGRWRNLPKKAGLKRCGKSCRLRWLNYL 61
                               89********************************************97 PP
2Myb_DNA-binding54.82.2e-1767111147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg+ +++E+el+v+++k+lG++ W++Ia +++ gRt++++k++w++ 
  Rmu_sc0004359.1_g000048.1  67 RGNISPDEEELIVKLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                                7899******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MGRSPCCAKE GLNRGAWTAL EDRDLTEYIK VHGEGRWRNL PKKAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEELIVK LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRIQDQE  120
ARSSPSSAGG EEPKSKKAKN VMASPFSHNV IRTKAAKCNK VFINPQLPHK GLFQMDDHRP  180
MDHHQHVDHR PDENGLSLSP SLLETSSSSE FLVDFGMNSD LCLASLLSSK FSSGDYLFSE  240
EMQLQEQYWS GNVGSGEDCV VDDQLQPNTV LNFQSLNYFL DADANQGDWL ELAESS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-62MYB family protein