PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004174.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 280aa    MW: 31335.8 Da    PI: 6.6783
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004174.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind43.11.1e-13220269251
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HH CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfa 51 
                                F +k++++++d++l+ +isw ++g+sfvv+d+ efa+ vLp+ Fkhsn++
  Rmu_sc0004174.1_g000004.1 220 FQSKTFDLVDDPSLDLIISWGSTGRSFVVWDPVEFARLVLPRNFKHSNLQ 269
                                889********************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MSKIDKELAA LSIDTVVAAL YEDRSDATPV ELSAGDLSEF YRLLGHLVRT LLYPSTQSSK  60
ITLEEARLIY VLNAKGPYLP LEHYKYTTIR KAVVEGRRHK KAALVFPSVI TAVCQAKGIV  120
FEDSDEMAPP LKVFSRSSLL HSSSQSKTKG ISVDITSLSR PCLNISRFFV SFGIPIQKGE  180
KKPYFDLGLV WDCCAVRRST SELDVRGNTS ELAETPVTPF QSKTFDLVDD PSLDLIISWG  240
STGRSFVVWD PVEFARLVLP RNFKHSNLQK EEEEKLDEQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-23HSF family protein