PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0004093.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HSF | ||||||||
Protein Properties | Length: 236aa MW: 26955.9 Da PI: 8.7191 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 56.4 | 8.2e-18 | 50 | 144 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 F +k++e+++ + l+ +i+w+++g+ + ++ +f k v + + +f+S++RQL+ YgFkk ++++ k e++h++ Rmu_sc0004093.1_g000001.1 50 FPSKVFEVVDYPPLDYCIRWNTEGTGLQIVSDADFRK-VALNLLCQGSFSSLTRQLQAYGFKKNTKSRCK-------HEYSHEK 125 889**********************************.66688899**********************99.......9999999 PP ..XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 ..Fkkgkkellekikrkks 102 F + +k++l+ki rk Rmu_sc0004093.1_g000001.1 126 gyFLRAQKQKLKKICRKPP 144 99**************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MEVNEIAQVL LQIQDEEVFP RQKFQAHAPP PEAPAHELEQ FKRRLAGLDF PSKVFEVVDY 60 PPLDYCIRWN TEGTGLQIVS DADFRKVALN LLCQGSFSSL TRQLQAYGFK KNTKSRCKHE 120 YSHEKGYFLR AQKQKLKKIC RKPPQATGKT PGEGREDPLL NVEGRLTSLE AKMTCLQAMS 180 NVEAWGMDQW LRVEGRQTSL EAKLTSLDAK SDRMISEMVA IWQLVESRAH RLTPHG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51910.1 | 1e-12 | HSF family protein |