PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT3G51910.1

Common Name

AT-HSFA7A, F4F15.20, HSF09, HSFA7A

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HSF

Protein Properties

Length: 272aa MW: 31776 Da PI: 6.4315

Description

heat shock transcription factor A7A

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT3G51910.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.7	1e-34	30	120	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++e+++d+++++++sw++ g+sfvv+d ++f++ +Lp++Fkhsnf+SF+RQLn+YgF+k++ e+ weF++++F g+++ll++ik AT3G51910.1 30 FLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKHSNFSSFIRQLNTYGFRKIEAER---------WEFANEEFLLGQRQLLKNIK 117 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r++ AT3G51910.1 118 RRN 120 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.6E-55	26	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	6.12E-34	26	119	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.3E-36	26	119	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.2E-30	30	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-19	30	53	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-19	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	69	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-19	81	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0009644	Biological Process	response to high light intensity
GO:0032268	Biological Process	regulation of cellular protein metabolic process
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000230	anatomy	inflorescence meristem
PO:0000293	anatomy	guard cell
PO:0009005	anatomy	root
PO:0009025	anatomy	vascular leaf
PO:0009029	anatomy	stamen
PO:0009030	anatomy	carpel
PO:0009047	anatomy	stem
PO:0009052	anatomy	flower pedicel
PO:0020100	anatomy	hypocotyl
PO:0020137	anatomy	leaf apex
PO:0025022	anatomy	collective leaf structure
PO:0007115	developmental stage	LP.04 four leaves visible stage
PO:0007123	developmental stage	LP.06 six leaves visible stage
PO:0007611	developmental stage	petal differentiation and expansion stage
PO:0007616	developmental stage	flowering stage

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MMNPFLPEGC DPPPPPQPME GLHENAPPPF LTKTFEMVDD PNTDHIVSWN RGGTSFVVWD 60 LHSFSTILLP RHFKHSNFSS FIRQLNTYGF RKIEAERWEF ANEEFLLGQR QLLKNIKRRN 120 PFTPSSSPSH DACNELRREK QVLMMEIVSL RQQQQTTKSY IKAMEQRIEG TERKQRQMMS 180 FLARAMQSPS FLHQLLKQRD KKIKELEDNE SAKRKRGSSS MSELEVLALE MQGHGKQRNM 240 LEEEDHQLVV ERELDDGFWE ELLSDESLAS TS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	5e-24	28	119	18	120	Heat shock factor protein 1
5d5u_B	5e-24	28	119	27	129	Heat shock factor protein 1
5d5v_B	5e-24	28	119	27	129	Heat shock factor protein 1
5d5v_D	5e-24	28	119	27	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKNIKRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.43861	0.0	root\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	18409450	0.0
Genevisible	252081_at	0.0
Expression Atlas	AT3G51910	-
AtGenExpress	AT3G51910	-
ATTED-II	AT3G51910	-

Functional Description ? help Back to Top
Source	Description
TAIR	member of Heat Stress Transcription Factor (Hsf) family
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT3G51910.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT3G51910

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL049711	0.0	AL049711.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_190759.1	0.0	heat shock transcription factor A7A
Swissprot	Q9SV12	0.0	HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBL	D7LTZ9	1e-170	D7LTZ9_ARALL; AT-HSFA7A
STRING	AT3G51910.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1256	28	99
Representative plant	OGRP96	17	233

Link Out ? help Back to Top
Phytozome	AT3G51910.1
Entrez Gene	824354
iHOP	AT3G51910
wikigenes	AT3G51910

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Nover L, et al. Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need? Cell Stress Chaperones, 2001. 6(3): p. 177-89 [PMID:11599559] Port M, et al. Role of Hsp17.4-CII as coregulator and cytoplasmic retention factor of tomato heat stress transcription factor HsfA2. Plant Physiol., 2004. 135(3): p. 1457-70 [PMID:15247379] Contento AL,Kim SJ,Bassham DC Transcriptome profiling of the response of Arabidopsis suspension culture cells to Suc starvation. Plant Physiol., 2004. 135(4): p. 2330-47 [PMID:15310832] Gieg Coordination of nuclear and mitochondrial genome expression during mitochondrial biogenesis in Arabidopsis. Plant Cell, 2005. 17(5): p. 1497-512 [PMID:15829605] Vanderauwera S, et al. Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis. Plant Physiol., 2005. 139(2): p. 806-21 [PMID:16183842] Vergnolle C, et al. The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions. Plant Physiol., 2005. 139(3): p. 1217-33 [PMID:16258011] Xin Z,Zhao Y,Zheng ZL Transcriptome analysis reveals specific modulation of abscisic acid signaling by ROP10 small GTPase in Arabidopsis. Plant Physiol., 2005. 139(3): p. 1350-65 [PMID:16258012] Nicola Large-scale analysis of mRNA translation states during sucrose starvation in arabidopsis cells identifies cell proliferation and chromatin structure as targets of translational control. Plant Physiol., 2006. 141(2): p. 663-73 [PMID:16632591] Nishizawa A, et al. Arabidopsis heat shock transcription factor A2 as a key regulator in response to several types of environmental stress. Plant J., 2006. 48(4): p. 535-47 [PMID:17059409] Charng YY, et al. A heat-inducible transcription factor, HsfA2, is required for extension of acquired thermotolerance in Arabidopsis. Plant Physiol., 2007. 143(1): p. 251-62 [PMID:17085506] Larkindale J,Vierling E Core genome responses involved in acclimation to high temperature. Plant Physiol., 2008. 146(2): p. 748-61 [PMID:18055584] Cartagena JA, et al. The Arabidopsis SDG4 contributes to the regulation of pollen tube growth by methylation of histone H3 lysines 4 and 36 in mature pollen. Dev. Biol., 2008. 315(2): p. 355-68 [PMID:18252252] Guo J, et al. Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis. J Genet Genomics, 2008. 35(2): p. 105-18 [PMID:18407058] Sugio A,Dreos R,Aparicio F,Maule AJ The cytosolic protein response as a subcomponent of the wider heat shock response in Arabidopsis. Plant Cell, 2009. 21(2): p. 642-54 [PMID:19244141] Nishizawa-Yokoi A, et al. HsfA1d and HsfA1e involved in the transcriptional regulation of HsfA2 function as key regulators for the Hsf signaling network in response to environmental stress. Plant Cell Physiol., 2011. 52(5): p. 933-45 [PMID:21471117] Ikeda M,Mitsuda N,Ohme-Takagi M Arabidopsis HsfB1 and HsfB2b act as repressors of the expression of heat-inducible Hsfs but positively regulate the acquired thermotolerance. Plant Physiol., 2011. 157(3): p. 1243-54 [PMID:21908690] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771] Nie S,Yue H,Xing D A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance. Plant Physiol., 2016. [PMID:26099269]