PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003949.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 742aa MW: 81306.1 Da PI: 4.8439

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003949.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.6e-07	693	723	2	32
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg 32 +rW+ E++ l +v+++G g+Wk I t Rmu_sc0003949.1_g000004.1 693 KRWSLHEEDTLRTGVQKYGRGNWKVILDTYR 723 59************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence
MPEDDDDEED PIGASSLESK SDVSDSLLIS YSLQLSHWSP TLISPAMKKV AVGDSEVEAQ 60 FFDQPVAVLM DLDVDVSRWV LEFLFRDREK ESVAKRVLGV LPLSNHDWRL KKTLLLRTIE 120 SQILDEASVT ETLLESLESI EVLDRGQGLP ITHSMRAAYC AVATDCTVKF LAAFRGKPSG 180 KYMEAVDRIW RGRVRILEES EGCELVSAEL KETRDEVEAA IWDIKVSKKL ASLNTRNDAL 240 ALVAAYVEEA LGILGPPFIA WAVRFNKHKG SLSSEADQVA VESDGNAGDG CQVQVPTANG 300 ADLDVQMANG AVLDVQMGNG VDLGDGSKLE VNGANVRDGS ELEAQRGATV NSGSEQEAQR 360 ANGPNVNSEF ELEAQRVNGA NDGSARSEQE PQRAKGDNVS DACEREAHDT NVGDESESQI 420 VTVAYFNSRS EMGHYHTMNG VQLQIVGAER LPPNGNHRVL SSEPATKEKE TPRSTGLRRR 480 HGPVKIRDAE DVGTEASAGI YNSVSSAEVR RVQEELKSSV LALPAAVTDP LPYALRKSEI 540 VRSELGIRPV DHVSGENGGA ANPSVAKCTE PDQFNNDNHG NHTSHQNDVS QPSGKENDAP 600 NLSVDKGKGT EYVQTGDVNP GNPSCSFQNN VSRAGLMEPN STTHTYEWDD SLGMSPEQTN 660 SKGRLHLPSP KRNAVSPLKK YEDKRSFKRR KVKRWSLHEE DTLRTGVQKY GRGNWKVILD 720 TYRDAFEERT KVTTFRSIWN SC

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence

MPEDDDDEED PIGASSLESK SDVSDSLLIS YSLQLSHWSP TLISPAMKKV AVGDSEVEAQ  60
FFDQPVAVLM DLDVDVSRWV LEFLFRDREK ESVAKRVLGV LPLSNHDWRL KKTLLLRTIE  120
SQILDEASVT ETLLESLESI EVLDRGQGLP ITHSMRAAYC AVATDCTVKF LAAFRGKPSG  180
KYMEAVDRIW RGRVRILEES EGCELVSAEL KETRDEVEAA IWDIKVSKKL ASLNTRNDAL  240
ALVAAYVEEA LGILGPPFIA WAVRFNKHKG SLSSEADQVA VESDGNAGDG CQVQVPTANG  300
ADLDVQMANG AVLDVQMGNG VDLGDGSKLE VNGANVRDGS ELEAQRGATV NSGSEQEAQR  360
ANGPNVNSEF ELEAQRVNGA NDGSARSEQE PQRAKGDNVS DACEREAHDT NVGDESESQI  420
VTVAYFNSRS EMGHYHTMNG VQLQIVGAER LPPNGNHRVL SSEPATKEKE TPRSTGLRRR  480
HGPVKIRDAE DVGTEASAGI YNSVSSAEVR RVQEELKSSV LALPAAVTDP LPYALRKSEI  540
VRSELGIRPV DHVSGENGGA ANPSVAKCTE PDQFNNDNHG NHTSHQNDVS QPSGKENDAP  600
NLSVDKGKGT EYVQTGDVNP GNPSCSFQNN VSRAGLMEPN STTHTYEWDD SLGMSPEQTN  660
SKGRLHLPSP KRNAVSPLKK YEDKRSFKRR KVKRWSLHEE DTLRTGVQKY GRGNWKVILD  720
TYRDAFEERT KVTTFRSIWN SC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	1e-11	MYB_related family protein