PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003729.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 497aa    MW: 56137.8 Da    PI: 4.5819
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003729.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2514.7e-771194822373
                       GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                +elL++  eav++++   a++++a+l++l   s++g +++++la++ft++L+ +  +      ++  p e + ++ ++++++++
  Rmu_sc0003729.1_g000009.1 119 TELLFAGSEAVEAQNWVFASNIIAKLKTLlsGSENGdNSFNKLATFFTQGLHYKTIN------SIEVPHEPAVSRNTDTMSSFQ 196
                                68999***********************9775667768**************99888......34455666666789999**** PP

                       GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerL 165
                                +++e+sP++kfsh+taNqaIlea++++e +H+iDfdi +G QWp+L+  La R+ +  +sl++T++   +++s+   ++tg+rL
  Rmu_sc0003729.1_g000009.1 197 MLQELSPFVKFSHFTANQAILEATQEDEDIHVIDFDIVEGSQWPSLMVDLAMRKgRRCASLKVTAITV-DQQSAALAQQTGRRL 279
                                ******************************************************55567********9.55789999******* PP

                       GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.... 245
                                ++f e++++ f f+ +++ + e  ++ +++v   +a++ n++++  +++++s sl +   ++L  + +lsPk++v+v++e    
  Rmu_sc0003729.1_g000009.1 280 KEFSESINLLFIFDQMMMATEE--DFAKIEVVA-DAVVANCMIHQLHMPKRSISLVK---AFLGGMSKLSPKLIVLVQEElfnf 357
                                ***************7555444..469998876.67778999999999999999999...********************7665 PP

                       GRAS 246 adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpv 327
                                +++ s  F+e f+eal++y +l dsl ++++ e     + +E+e+lg +i + v +   e    +e  + W++ +++  GFk++
  Rmu_sc0003729.1_g000009.1 358 SKMPSMVFAEFFSEALHHYNSLCDSLVTSFSGEYkMGLRQIEKEILGIKILESVRQFPCE----KEDRMLWEDCFTSlKGFKSI 437
                                5557779*******************88887777356689****************9999....555556*****9868***** PP

                       GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                p+s+ +++qak+l++ ++ +gy v++e+g l l+Wk+rpL+++S+W
  Rmu_sc0003729.1_g000009.1 438 PISSCNVSQAKYLVSLFN-RGYWVQHEKGRLALCWKSRPLTTASFW 482
                                ******************.*************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    
MEVELIDHPF NPSYDLYDCR FESDSSFQTS DLFTPCTTNV DQNSDHESLN RLLQIESHLM  60
DIDSSISSGS DAIGLDGVVD SEFASYISEE APENVHVSTE GNSLLKEIQM DLLEESSLTE  120
LLFAGSEAVE AQNWVFASNI IAKLKTLLSG SENGDNSFNK LATFFTQGLH YKTINSIEVP  180
HEPAVSRNTD TMSSFQMLQE LSPFVKFSHF TANQAILEAT QEDEDIHVID FDIVEGSQWP  240
SLMVDLAMRK GRRCASLKVT AITVDQQSAA LAQQTGRRLK EFSESINLLF IFDQMMMATE  300
EDFAKIEVVA DAVVANCMIH QLHMPKRSIS LVKAFLGGMS KLSPKLIVLV QEELFNFSKM  360
PSMVFAEFFS EALHHYNSLC DSLVTSFSGE YKMGLRQIEK EILGIKILES VRQFPCEKED  420
RMLWEDCFTS LKGFKSIPIS SCNVSQAKYL VSLFNRGYWV QHEKGRLALC WKSRPLTTAS  480
FWVPLTYKIK ENYVNPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.19e-49GRAS family protein