PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003708.1_g000017.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 205aa    MW: 23399.7 Da    PI: 9.9001
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003708.1_g000017.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.1e-51141381128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhPtdeelv +yLk+kv + +l++ ++i+ev+++k++PwdLp      e+e yfFs+r+ ky++g+r+nrat sgyWk
  Rmu_sc0003708.1_g000017.1  14 LPPGFRFHPTDEELVLQYLKRKVYSCPLPA-SIIPEVEVCKSDPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATGSGYWK 93 
                                79****************************.89***************54...46799************************** PP

                        NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atg dk+++++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl
  Rmu_sc0003708.1_g000017.1  94 ATGLDKQIVASrGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 138
                                ********99857778***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MEKLSFVRNG ELRLPPGFRF HPTDEELVLQ YLKRKVYSCP LPASIIPEVE VCKSDPWDLP  60
GDLEQERYFF STREAKYPNG NRSNRATGSG YWKATGLDKQ IVASRGNQVV GMKKTLVFYR  120
GKPPHGSRTD WIMHEYRLVL AEDKNNSTTQ SPVPVNNWVH PQVQVESQMS FLPRQRSTKR  180
AVAAIPCQTC KNHEPAIVAR TTSLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-89NAC family protein