PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003550.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 493aa    MW: 54953 Da    PI: 8.2058
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003550.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.22.4e-27112200291
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                                fYn+YA +vGF++r++  ++s+ +g+++ rt+vC+keg+r  +k++ +k+ r+r+ tr+gCka++ +kk ++g+w+v+k+++eH
  Rmu_sc0003550.1_g000012.1 112 FYNAYALRVGFRTRVNDLSRSRVDGSVIARTLVCNKEGYRVADKRD-RKSVRPRPPTRVGCKAMISMKKLSNGNWVVAKFVKEH 194
                                9*****************************************9999.99*********************************** PP

                       FAR1  86 nHelap 91 
                                 H+l+p
  Rmu_sc0003550.1_g000012.1 195 AHSLTP 200
                                ***975 PP
2FAR191.41.2e-28380467290
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                                fYn Y+ ++GF++r+++ ++sk++g+i+ rtfvCskeg+r++++++ +k+ ++ra tr+gC a+l +kk + gkw+vtk+ +eH
  Rmu_sc0003550.1_g000012.1 380 FYNVYGLRMGFNTRMNYLSRSKHDGTIIARTFVCSKEGYRKPDRRD-KKTVNPRAPTRVGCMAMLSIKKLNIGKWVVTKFIKEH 462
                                9******************************************999.9************************************ PP

                       FAR1  86 nHela 90 
                                nH+l 
  Rmu_sc0003550.1_g000012.1 463 NHALI 467
                                **995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    
MELGGAAESK GESFMISKAS KNTTFPSLSL TVKEGKESKT VKHMTQNGAS DDLADVELRL  60
NNDDAILGTS VGEVSNIGQT EQVGQNSASL EVEADEPYVG QEFESEAAAH AFYNAYALRV  120
GFRTRVNDLS RSRVDGSVIA RTLVCNKEGY RVADKRDRKS VRPRPPTRVG CKAMISMKKL  180
SNGNWVVAKF VKEHAHSLTP GKSENGLNDE SSDEQIKIKE LTQQLMVERK RSASYRKIID  240
LLFNHIDDHT QHLSQKILRV NDILKDIASS EAKGRSIGTD QGKPVIFIAE FTYDSLNLHI  300
FAVDSVLDIN VNEEVSTGST DTEFKHSNDG ALVGTSLQKI LWVVQNDERT QNSSKDGSVV  360
EVDEPYVGQE FDTEVNAQAF YNVYGLRMGF NTRMNYLSRS KHDGTIIART FVCSKEGYRK  420
PDRRDKKTVN PRAPTRVGCM AMLSIKKLNI GKWVVTKFIK EHNHALIASK RPKGLIEDQI  480
PVSYCDILYS FLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-56FAR1 family protein