PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003400.1_g000029.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 677aa MW: 75066.3 Da PI: 9.9272

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003400.1_g000029.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.5	5.4e-12	17	68	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 WTt+E++ll++av+++G+ +W+++a+ + ++t+ ck+++++++ Rmu_sc0003400.1_g000029.1 17 TWTTWEELLLACAVHRYGTQSWDSVAAQLRkrssnlHHLTPQICKHKFHDLR 68 7*****************************9999999999999999999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence
MDKPNFPEKQ TTATTTTWTT WEELLLACAV HRYGTQSWDS VAAQLRKRSS NLHHLTPQIC 60 KHKFHDLRRR FNHHHDAAVG DGDDAASSPI PWLDQLRQQR LDELRREVQR SDVSIVSLQS 120 KVERLKEVRE KLDLDKSGEE QEIKDKSVEP ENVAEKEVSE RNDGRSFDES NTTDPKREIP 180 ETGVDAAEKE SEPVEPAAGE IGAVEKSSNP VVVEDSCNGS SDSVVKEAPV AESEKANSGE 240 LRESVAESKG TKESRSSSEV QSSASLSRKL GPELKPSEPV EPDQEDQSPA MNQIPVESQP 300 LDTSIYTNMI RQHTDFELVQ TRLNGGWYSS CKSKFFRDIL LICKNAIVFF GKRAPEYTAA 360 CELQLLVLKE MARKDRNQDP SPKQQTHMPS KEETLTPPAL PLKPETESSE SLLAKSKLSI 420 PLTACRKRSS IKARASTSSS APDIKKEQKT TLLRDVKPAI SWKQKEDSSD EVEEQLPVTK 480 KRRKERVGSN SRNNSNKNSR SRSDTKKEKN PDANANANVV SSTRAMISNE NSESIAEMDK 540 KSSSNTSGKR QSAEKFLSRM KRSSGSNNKS ETLKIPENDS KGAAEQRKNG NIKGNAQKTA 600 EQRKNGNGKG SAQKEVAEQK KGGNGKGNAQ KEQSSRRGSG GRQAAKEQGS PTKRSVGRPS 660 KRAAETTRAA PAKRRRY

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence

MDKPNFPEKQ TTATTTTWTT WEELLLACAV HRYGTQSWDS VAAQLRKRSS NLHHLTPQIC  60
KHKFHDLRRR FNHHHDAAVG DGDDAASSPI PWLDQLRQQR LDELRREVQR SDVSIVSLQS  120
KVERLKEVRE KLDLDKSGEE QEIKDKSVEP ENVAEKEVSE RNDGRSFDES NTTDPKREIP  180
ETGVDAAEKE SEPVEPAAGE IGAVEKSSNP VVVEDSCNGS SDSVVKEAPV AESEKANSGE  240
LRESVAESKG TKESRSSSEV QSSASLSRKL GPELKPSEPV EPDQEDQSPA MNQIPVESQP  300
LDTSIYTNMI RQHTDFELVQ TRLNGGWYSS CKSKFFRDIL LICKNAIVFF GKRAPEYTAA  360
CELQLLVLKE MARKDRNQDP SPKQQTHMPS KEETLTPPAL PLKPETESSE SLLAKSKLSI  420
PLTACRKRSS IKARASTSSS APDIKKEQKT TLLRDVKPAI SWKQKEDSSD EVEEQLPVTK  480
KRRKERVGSN SRNNSNKNSR SRSDTKKEKN PDANANANVV SSTRAMISNE NSESIAEMDK  540
KSSSNTSGKR QSAEKFLSRM KRSSGSNNKS ETLKIPENDS KGAAEQRKNG NIKGNAQKTA  600
EQRKNGNGKG SAQKEVAEQK KGGNGKGNAQ KEQSSRRGSG GRQAAKEQGS PTKRSVGRPS  660
KRAAETTRAA PAKRRRY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	480	484	KKRRK
2	480	509	KKRRKERVGSNSRNNSNKNSRSRSDTKKEK
3	481	510	KKRRKERVGSNSRNNSNKNSRSRSDTKKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	1e-57	MYB_related family protein