PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G57980.1
Common NameT10K17.190
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 632aa    MW: 70247.5 Da    PI: 9.8749
Description DNA-binding bromodomain-containing protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G57980.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.87.7e-11248848
                     HHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     E++ll++av+++G+++W+++a+++        ++t+ +c++++++++
      AT3G57980.1  2 EELLLACAVHRHGTDSWDSVASEVHkqnstfRTLTAIDCRHKYNDLK 48
                     9*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.44152IPR017930Myb domain
PfamPF002491.8E-10248IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-4249IPR009057Homeodomain-like
CDDcd001674.90E-5248No hitNo description
SMARTSM002978.3E-14112376IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.2E-16249394IPR001487Bromodomain
SuperFamilySSF473702.09E-20276388IPR001487Bromodomain
CDDcd043693.59E-21278371No hitNo description
PfamPF004396.0E-13282361IPR001487Bromodomain
PROSITE profilePS5001413.81286357IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009031anatomysepal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MEELLLACAV HRHGTDSWDS VASEVHKQNS TFRTLTAIDC RHKYNDLKRR FSRNLVSPGS  60
ADEETLAAEI SSVPWLEELR KLRVDELRRE VERYDLSISS LQLKVKTLED EREKSLKTEN  120
SDLDRIAETK ENHTESGNNS GVPVTELKNS PDPNDNSPGT GSENTNRAVK IAEPVDEEPN  180
RIGGEDNDEK PAREDSGRGS CESVAKESDR AEPKREGNDS PELVESMDES KGEEDTKETS  240
DGQSSASFPR KETVDQDQPD NKDQSLTVNK IFVESQPLSD FIEILQSHPI GSHFSRRLET  300
QETSDYYRII RQHIDFEMIR SRVEEGYYKT ARTKFFRDLL LLINNVRVFY GEPSPEFNAA  360
KQLYQLIKKQ MSFKIPKQTL PPPKEDALVT SKEEVKVSSL KPTLSVPIIA CRKRSSLAVR  420
SPASVTETLK KKTRVVPTVD EKQVSEEEEG RPSDKDEKPI VSKKMARGAA PSTAKKVGSR  480
NVKTSLNAGI SNRGRSPNGS SVLKKSVQQK KGINTSGGSK KQSAASFLKR MKGVSSSETV  540
VETVKAESSN GKRGAEQRKS NSKSEKVDAV KLPAGQKRLT GKRPTIEKGS PTKKNSGVAS  600
KRGTASLMAK RDSETSEKET GSSTRPKKRS KR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.287060.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184108520.0
Genevisible251615_at0.0
Expression AtlasAT3G57980-
AtGenExpressAT3G57980-
ATTED-IIAT3G57980-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G57980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G57980
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329770.0AL132977.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191357.20.0DNA-binding bromodomain-containing protein
TrEMBLF4J4L90.0F4J4L9_ARATH; DNA-binding bromodomain-containing protein
STRINGAT3G57980.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Representative plantOGRP38051123
Publications ? help Back to Top
  1. Pandey R, et al.
    Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.
    Nucleic Acids Res., 2002. 30(23): p. 5036-55
    [PMID:12466527]