PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0003317.1_g000023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 165aa MW: 19228.7 Da PI: 9.7956 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.4 | 1.9e-14 | 16 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 + +WT+ Ed++ +d+vk +G g W++ +++ g ++R+++++++rw++yl Rmu_sc0003317.1_g000023.1 16 KVAWTAFEDQIVKDYVKNHGAGKWDKLSKETGkcLKRSGNSVRLRWLNYL 65 568*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.8e-16 | 75 | 115 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T+ E++ll++++k+lG++ W++Iar+++ gRt++q+k++w++ Rmu_sc0003317.1_g000023.1 75 TEYEEDLLIRLHKLLGNR-WSLIARRIP-GRTENQVKNYWNST 115 888***************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence |
MGSRSHCPRD KHGRKKVAWT AFEDQIVKDY VKNHGAGKWD KLSKETGKCL KRSGNSVRLR 60 WLNYLRPDIN TSSITEYEED LLIRLHKLLG NRWSLIARRI PGRTENQVKN YWNSTLKKKL 120 SQKNLCEELC NWTLEDSSSP VPTTDQDDPH WTKKNVYEEG QACQG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27920.1 | 9e-48 | MYB family protein |