PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003187.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 778aa    MW: 87450.6 Da    PI: 6.0002
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003187.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.92.9e-712886301351
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl 83 
                                l +lLl++Ae v  +++e+a++lL +++ la  +g+p+q+++ yf+eAL++r+ +   +ly +  + + ++  +   +  a+ +
  Rmu_sc0003187.1_g000005.1 288 LAHLLLAAAEKVGYQQFERASRLLLQVEWLACFKGTPVQKVVCYFAEALRERIEK-EIGLYTSKgNEEMSHYVHGLGTNLAFIA 370
                                579***************************************************9.5555655514444443444555555556 PP

                       GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLa 166
                                 ++  P++ + +++a q++ e v++e+r+H iD++i  G+QW  L++aLa+R+e p   l iT+vg      k++++etgerL+
  Rmu_sc0003187.1_g000005.1 371 CHQEVPFHPVLQFAAIQTMIENVANESRIHLIDLEIRFGTQWTGLMEALAEREECPVeLLTITAVGV---RGKQNIKETGERLT 451
                                77778************************************************7666489******9...589*********** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                                ++A +l++pf+f+ +++++++d++ + ++  + + al+V   l l ++ +++ +le+    +++++++++P ++vv+e ea+hn
  Rmu_sc0003187.1_g000005.1 452 SVAMSLNLPFQFKEVIVSDMQDINDRLFDEIEdDQALVVYAPLVLRTMIARPRCLEN----LMRVMRNINPSLMVVIEVEANHN 531
                                ***********************999996555499*********************9....*********************** PP

                       GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                                s+sF++rf++al y+sa+fd++e+ + +e + r+ +E  ll++ i+n+va+eg++r++r  ++  Wr+ + ++ + ++++s+k 
  Rmu_sc0003187.1_g000005.1 532 SPSFVNRFIDALFYHSAFFDCVETCM-TEGKSRVIME-GLLREGIRNIVAAEGSDRVARSVKMDVWRAFFASFRMVEMSFSNKS 613
                                ************************97.3445555555.56******************************************** PP

                       GRAS 334 akqaklllrkvksdgyrv 351
                                  qa+ + +kv  + +++
  Rmu_sc0003187.1_g000005.1 614 LYQANEIAKKVIRR-FSL 630
                                *****999988744.655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    
MANAFFSFSP FDFEIQGGLS PPQLEDSDKE DTLMLNVRKG DHLFGLEDQL GEMNAPSSEH  60
GFCQDSKAKK GVVISHLSKD QSQHDVLDHQ QQKQSKPNFF ILDNFNFETV SSQQGFYHAN  120
KAGKDHQHHH HQEQQQYSKS SSSNLENFSS FDFTFPSGQV TQPVDDGARF THSQIGGSDI  180
IETSKKMQPP QSSLATLELL NSYGSAFKKL RGERQRSSNI VKGKEIDQNS SYVVSGKQKL  240
SIEEVMRVAG ARFVQFSSQG YEDFYMSMHP FGYALSGLCE EETKDVELAH LLLAAAEKVG  300
YQQFERASRL LLQVEWLACF KGTPVQKVVC YFAEALRERI EKEIGLYTSK GNEEMSHYVH  360
GLGTNLAFIA CHQEVPFHPV LQFAAIQTMI ENVANESRIH LIDLEIRFGT QWTGLMEALA  420
EREECPVELL TITAVGVRGK QNIKETGERL TSVAMSLNLP FQFKEVIVSD MQDINDRLFD  480
EIEDDQALVV YAPLVLRTMI ARPRCLENLM RVMRNINPSL MVVIEVEANH NSPSFVNRFI  540
DALFYHSAFF DCVETCMTEG KSRVIMEGLL REGIRNIVAA EGSDRVARSV KMDVWRAFFA  600
SFRMVEMSFS NKSLYQANEI AKKVIRRFSL HSPSSDMSTK QGGSQQPTTE GNNEPIIQPA  660
GTGNSSNTTQ VVGGEIFLDG FVPIPIPPNA SIEEKLAIFQ QNNASYYEKT SKGFAEGRRK  720
IDDLVNQVQT LGQGLQQTQG RLDSMSQRSQ VNHDQLVTLI NDQAAQNKHI HNIKASLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-39GRAS family protein