PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003187.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 657aa    MW: 74615.6 Da    PI: 5.9111
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003187.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.36.6e-802856491374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                lv+lLl++Ae v  +++e+a++lL + + + s +g+p+q+++ yf+eAL++r+ +++ +  ++ + + ++  +   +  a+ + 
  Rmu_sc0003187.1_g000003.1 285 LVHLLLAAAEKVGYQQFERASRLLLQCEWIPSFKGTPVQKVVCYFAEALRERIEKETGQYTSKGSEELSQYAHALGTNLAYIAC 368
                                68*****************************************************66666666655555555555566666677 PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLak 167
                                +   P++ + +++a qa+ e v++e+r+H iD++i  G+QW  L++a+a+R+e p   l iT+vg    g k++++etgerLa+
  Rmu_sc0003187.1_g000003.1 369 HREVPFHPVLQFAAIQAMIENVANESRIHLIDLEIRSGVQWTGLMEAIAEREECPVkLLTITAVGV---GGKQNIKETGERLAS 449
                                7888************************************************7665489*******...89************* PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                +A +l++pf+f+ +++++++d++ + + +++ +Ea++V   l l ++ +++ +le+    +++++++++P ++vv+e ea+hns
  Rmu_sc0003187.1_g000003.1 450 VAMSLNLPFKFKEVIVSDMQDINNQLFeDIEDDEAVVVYAPLILRTIIARPRCLEN----LMRVMRNINPSLMVVIEVEANHNS 529
                                **********************9999866778***********************9....************************ PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                +sF++rf+++l +ysa+fd+le+ + ++++ r+ +E   l + i+n+va+eg+er+ r  ++  Wr+ + ++ + ++++s++  
  Rmu_sc0003187.1_g000003.1 530 PSFVHRFIDTLFFYSAFFDCLETCM-KQEKYRVIIEGL-LCEGIRNIVAAEGSERVVRSVKMDVWRAFFARFSMVEMSFSNSSF 611
                                ***********************96.556677777765.99******************************************* PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 qa+l+ +k++    +++ + ++l+ gWk+ p+ s+SaW+
  Rmu_sc0003187.1_g000003.1 612 YQASLVAKKFGC--TTLDRNGKCLTVGWKGTPIHSLSAWK 649
                                ***********4..59***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    
MANALFSFTP FDFEIQGGLS PPQLEDYDKE ETVMFNVGKR DHLFGLEDQL GGMNTLSSEH  60
GFYQDNDAKT GVVVCHLSKD QNQQRDLEHQ QQSKTEFLIL DNFDFETVSS QHGFYHANKA  120
GKDHQHHHYQ QQKQQSKSSF SILENFNNFD FYFPSGQVTE PVENDARFTH SQIRGSDIFE  180
LNTQLPPPQS SLGTLELLNS YGSAFKKLKG ERKSSSRAVK GNEIDQNTYV VNGKQKLSTE  240
EVMRVAGARY VQFSSQGYEN LYMSMHPFGY ALSGLCEEET KDVELVHLLL AAAEKVGYQQ  300
FERASRLLLQ CEWIPSFKGT PVQKVVCYFA EALRERIEKE TGQYTSKGSE ELSQYAHALG  360
TNLAYIACHR EVPFHPVLQF AAIQAMIENV ANESRIHLID LEIRSGVQWT GLMEAIAERE  420
ECPVKLLTIT AVGVGGKQNI KETGERLASV AMSLNLPFKF KEVIVSDMQD INNQLFEDIE  480
DDEAVVVYAP LILRTIIARP RCLENLMRVM RNINPSLMVV IEVEANHNSP SFVHRFIDTL  540
FFYSAFFDCL ETCMKQEKYR VIIEGLLCEG IRNIVAAEGS ERVVRSVKMD VWRAFFARFS  600
MVEMSFSNSS FYQASLVAKK FGCTTLDRNG KCLTVGWKGT PIHSLSAWKF RLEKNVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-50GRAS family protein