PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003120.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 308aa    MW: 34185.1 Da    PI: 5.2001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003120.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.7e-161461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+W + Ed+ll+d++k +G g W+ +a++ g++R++k+c++rw +yl
  Rmu_sc0003120.1_g000001.1 14 KGAWMAAEDKLLLDYIKNHGEGKWSNVAKETGLKRCGKSCRLRWMNYL 61
                               799*******************************************97 PP
2Myb_DNA-binding50.64.3e-1667111147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Rmu_sc0003120.1_g000001.1  67 RGSISDDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSN 111
                                78889*****************.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MGRGPRCSKD GLNKGAWMAA EDKLLLDYIK NHGEGKWSNV AKETGLKRCG KSCRLRWMNY  60
LRPDIKRGSI SDDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS NLAKKMAQAQ  120
SSPQSKCNNV IVQQTPDQVQ PQPQQQCSRV STVVPPRPPT STTAAASPLH HRTLDDFCNN  180
VAINNTNNLI KAVNSVDSRI SSEDVSLSTT TTTNTTSDGD DQLGSSPTNF MMDFNTDDHE  240
DFCKILDCDF ANLNNAIDGD DEHQGSPVLV LPKQMMDKNI QAADFGSLAS FLESDEDWLG  300
NDLNVMLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-57MYB family protein