PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003115.1_g000041.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 642aa MW: 71738 Da PI: 5.3636

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003115.1_g000041.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00023	458	491	17	55
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 N+++ Lr+++P+ + + a+iL +++Y+k+L+ Rmu_sc0003115.1_g000041.1 458 NEKLLVLRSMVPSM-----TEIDRASILDDTIKYLKELE 491 99999******8.....79*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence
MANGTQIHER VPENLRKQFA VAVRSIKWSY AIFWSLSTTQ QGVLEWGEGY YNGDIKTRKT 60 VEGIEPKADK IGLQRNEQLR ELYKALLEGE STDQQAKVPS AALSPEDLTD AEWYYLLCMS 120 FVFNIGEGLP GRALANGKSI WLCNAQYADS KVFSRSLLAK TVVCFPYLGG VVELGVTELV 180 AEDPSLLQHI KASLLDFSKP DCSEKASSAP HKADEDSDQI LANIVGHEIV DTLGLENLYS 240 PSQELKFDQS GINGLHGHDE EFSMGSADEC SRGCEHNHQT EDSFMLEAVN GGASQVQSWH 300 FMDDDFSNGF QDSMNSSDCI SEAFVNQGKA HSSTRPENKN HSHLKELQNF NDTKFSSLDL 360 GPADDHLHYK RTLSAILGNS MRIIENPYFC SGSGKSSFVQ WKKGVVYKCS PKAQQKLLKK 420 ILFTVPLMMS GGSPSPQKET TTNSKSESDD MHEKMRENEK LLVLRSMVPS MTEIDRASIL 480 DDTIKYLKEL EARAEEIESC MDTVEAIARR KFLERAEKAS DNYDKTKTGN AKKPWINKRK 540 ACDIDESDPE LNRLVSKESL PLDVKVSVKE QEVLIEMRCP YREYILLDIM DAVNSLYLDA 600 HSVQSSTLND VLTLSLKSKF RGSAIAPVGM IKQALWKIAG KC

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence

MANGTQIHER VPENLRKQFA VAVRSIKWSY AIFWSLSTTQ QGVLEWGEGY YNGDIKTRKT  60
VEGIEPKADK IGLQRNEQLR ELYKALLEGE STDQQAKVPS AALSPEDLTD AEWYYLLCMS  120
FVFNIGEGLP GRALANGKSI WLCNAQYADS KVFSRSLLAK TVVCFPYLGG VVELGVTELV  180
AEDPSLLQHI KASLLDFSKP DCSEKASSAP HKADEDSDQI LANIVGHEIV DTLGLENLYS  240
PSQELKFDQS GINGLHGHDE EFSMGSADEC SRGCEHNHQT EDSFMLEAVN GGASQVQSWH  300
FMDDDFSNGF QDSMNSSDCI SEAFVNQGKA HSSTRPENKN HSHLKELQNF NDTKFSSLDL  360
GPADDHLHYK RTLSAILGNS MRIIENPYFC SGSGKSSFVQ WKKGVVYKCS PKAQQKLLKK  420
ILFTVPLMMS GGSPSPQKET TTNSKSESDD MHEKMRENEK LLVLRSMVPS MTEIDRASIL  480
DDTIKYLKEL EARAEEIESC MDTVEAIARR KFLERAEKAS DNYDKTKTGN AKKPWINKRK  540
ACDIDESDPE LNRLVSKESL PLDVKVSVKE QEVLIEMRCP YREYILLDIM DAVNSLYLDA  600
HSVQSSTLND VLTLSLKSKF RGSAIAPVGM IKQALWKIAG KC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-158	bHLH family protein