PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003063.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 636aa MW: 72805.6 Da PI: 7.0264

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003063.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26	3e-08	89	152	1	52
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............teker 52 +fY ++ GFsvrksks k r g+i +r ++Cskeg r+ ++ k ++ke+ Rmu_sc0003063.1_g000011.1 89 RFYAYHSIAKGFSVRKSKSDKD-RGGQIFRRSLCCSKEGWRKVQNPKkrtkvvgsvssqgKNKEQ 152 59999999********9998.8888**********99987766567888887764422222 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MVLIVLSSFY LSTDTDQHGL RFSEEQYHNS GGFSNEEGGF FSDESRGETF TFGLDESTDC 60 LRYKGKKYED LQFSDMNGIF FRSVEDVERF YAYHSIAKGF SVRKSKSDKD RGGQIFRRSL 120 CCSKEGWRKV QNPKKRTKVV GSVSSQGKNK EQSGIKRMVT RCEGRLANLF WRDSKCLVDY 180 NNFGDVLIMD STCKTNIYGK PLVVFVGVNN YRAIVPFGCA LLVDETEETY KWVLSTFIDS 240 MGGNKPIYVI TDQDDAMRNA DFMHLIYSGL SVTEWESYWN YVVAMAGLHD NPWVIGMYNK 300 RERWAEAFFK EDFFAGVRST QRCEQMHRNM KTGLGKYMRL YEDQIRFESR FIVDDEFHFP 360 DLGSSLVTLT QYGKQHRKWN VTYRNNNRVP TLSCTCKLFE ADGIPCCHIF TVMKVKQIIV 420 FLESLVTKRW TKDATTINEE TGPSNGVISD NSLRLARYGE MMAECTQTCF RASFSDDAYY 480 ETIESMRRMS IRARRYPVHE DQEDTAHNSL DGLHENVVKD HNICISKGTR TNPPTVVDDG 540 KAGQTKCAIK CGKCHQLGHN VRTCDKATND GRGGNHTRPD EEEYEFVASR RNTNSLLHHS 600 EEARDFAFFG GYDSIIPSVS TSRSHESSNS GEHEGS

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MVLIVLSSFY LSTDTDQHGL RFSEEQYHNS GGFSNEEGGF FSDESRGETF TFGLDESTDC  60
LRYKGKKYED LQFSDMNGIF FRSVEDVERF YAYHSIAKGF SVRKSKSDKD RGGQIFRRSL  120
CCSKEGWRKV QNPKKRTKVV GSVSSQGKNK EQSGIKRMVT RCEGRLANLF WRDSKCLVDY  180
NNFGDVLIMD STCKTNIYGK PLVVFVGVNN YRAIVPFGCA LLVDETEETY KWVLSTFIDS  240
MGGNKPIYVI TDQDDAMRNA DFMHLIYSGL SVTEWESYWN YVVAMAGLHD NPWVIGMYNK  300
RERWAEAFFK EDFFAGVRST QRCEQMHRNM KTGLGKYMRL YEDQIRFESR FIVDDEFHFP  360
DLGSSLVTLT QYGKQHRKWN VTYRNNNRVP TLSCTCKLFE ADGIPCCHIF TVMKVKQIIV  420
FLESLVTKRW TKDATTINEE TGPSNGVISD NSLRLARYGE MMAECTQTCF RASFSDDAYY  480
ETIESMRRMS IRARRYPVHE DQEDTAHNSL DGLHENVVKD HNICISKGTR TNPPTVVDDG  540
KAGQTKCAIK CGKCHQLGHN VRTCDKATND GRGGNHTRPD EEEYEFVASR RNTNSLLHHS  600
EEARDFAFFG GYDSIIPSVS TSRSHESSNS GEHEGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	2e-35	FAR1 family protein