PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003043.1_g000017.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 211aa    MW: 24051.2 Da    PI: 8.2293
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003043.1_g000017.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171562148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT++Ede+l +a++ +G + W++ a++ g++R +k+c++rw +yl
  Rmu_sc0003043.1_g000017.1 15 KGKWTPQEDEKLTEAIAVHGAKKWNSLASKAGLNRNGKSCRLRWVNYL 62
                               79********************************************97 PP
2Myb_DNA-binding50.45.1e-1668113148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg ++ +E++ +++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Rmu_sc0003043.1_g000017.1  68 RGDMSDQEEDMIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 113
                                7899******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MASEKQEPTA REFVKGKWTP QEDEKLTEAI AVHGAKKWNS LASKAGLNRN GKSCRLRWVN  60
YLRPNLKRGD MSDQEEDMII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN THLSKKINQK  120
EKQSSNGSNS TIQIPTVDEK PSVADDDRKV HVEMKQECLS SGVGTSAALI KKEVMIDPED  180
YSNTNINNID VDDFFNLLHK EPLSWEVPQI P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-53MYB family protein