PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002888.1_g000040.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 222aa    MW: 25603.8 Da    PI: 8.0825
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002888.1_g000040.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.71.5e-191663148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT+eEd++l+++++ +G++ Wk++a + g+ R++k+c++rw +yl
  Rmu_sc0002888.1_g000040.1 16 RGSWTAEEDQRLAQVIEVHGPRKWKSVATKAGLSRCGKSCRLRWMNYL 63
                               89********************************************97 PP
2Myb_DNA-binding50.54.6e-1669114148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Rmu_sc0002888.1_g000040.1  69 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 114
                                78999*****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MVPLSTRSYK NKEINRGSWT AEEDQRLAQV IEVHGPRKWK SVATKAGLSR CGKSCRLRWM  60
NYLRPNIKRG NISDQEEDLI LRLHKLLGNR WSLIAGRLPG RTDNEIKNYW NSHLSKKIKH  120
NERSQKQNRL LCASSNPAAQ ELSSSSEPQN VELMENNAVP IGMEDDSSKR EENYFFKSMS  180
FNGSSGDELL FDGSTADEGP LNLEWMNRFL EMDESWFTLH DI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.12e-56MYB family protein