PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002888.1_g000037.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 230aa    MW: 26182.4 Da    PI: 8.8966
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002888.1_g000037.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-161562148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+ Ed+ l d+vk++G g W + +r+ g++R++k+c++rw++yl
  Rmu_sc0002888.1_g000037.1 15 KGAWTAHEDQVLRDYVKEYGEGKWGKMSRETGLKRCGKSCRLRWLNYL 62
                               79********************************************97 PP
2Myb_DNA-binding49.97.6e-1668111146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++
  Rmu_sc0002888.1_g000037.1  68 RGNITGDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNS 111
                                788899****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MGRSSSRCDK EGANKGAWTA HEDQVLRDYV KEYGEGKWGK MSRETGLKRC GKSCRLRWLN  60
YLRPDIKRGN ITGDEEELII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN STIRKKQENS  120
SRRSRNERKT IKDPYLTNNE IRPTSSTRNE LAEQPFLSGV ERNIKAEPDS GDGFLQTTGE  180
SGMAWNFIMD LNAGQLSISE FLHTDFSKLC ELNTMVADGT NGADIGHLEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.17e-56MYB family protein