PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002888.1_g000030.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 274aa    MW: 30934.2 Da    PI: 5.8974
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002888.1_g000030.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-181461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+ Ed++l+d+vk++G g W +I+++ g++R++k++++rw++yl
  Rmu_sc0002888.1_g000030.1 14 KGAWTAREDQILIDYVKKHGEGKWGKISKETGLKRCGKSVRLRWLNYL 61
                               79********************************************97 PP
2Myb_DNA-binding47.34.7e-1571111547
                                -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
  Rmu_sc0002888.1_g000030.1  71 ADDEEELIIRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNST 111
                                579***************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MGRSSRSEKE GMKKGAWTAR EDQILIDYVK KHGEGKWGKI SKETGLKRCG KSVRLRWLNY  60
LRPDIKRGNI ADDEEELIIR LHRLLGNRWS LIAGRIPGRT DNEIKNYWNS TLRRKLQQEN  120
HLNEIKENSS SPSGSGASED DPHSTKNNGE LGGGMVEPTS SYCFTNHNEK KEDHERCHLE  180
STTTTTTNKT TFFSSATVEA EANKNDIELA GDDLSNDVTW NDFIMDLNEG QLDISEFLQT  240
DFSKLCELES PMKVEVGGCS TNHELPNNWA GGRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-48MYB family protein