PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002798.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 407aa    MW: 46748.2 Da    PI: 6.998
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002798.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1423.1e-1350130491
                       FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                                ++YAk+ G  +rk+++ k+  +g i+  ++vCs+  + ++ k++     ++ +++ tgC a+++  +++dg++++t++ l+HnH
  Rmu_sc0002798.1_g000008.1  50 EDYAKKSGWAIRKRSNPKK--EGAIKYVQLVCSRALRGKSPKES-----EPISSQITGCFARIRAVLKSDGEYNLTTVCLDHNH 126
                                68************99887..999**********9888887766.....899999***************************** PP

                       FAR1  88 elap 91 
                                +l+p
  Rmu_sc0002798.1_g000008.1 127 PLCP 130
                                **97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    
MDGNDTSQVP CYVKEDDDVI ISNEVESDDG DIPERGMRFN SYDGLYDYCE DYAKKSGWAI  60
RKRSNPKKEG AIKYVQLVCS RALRGKSPKE SEPISSQITG CFARIRAVLK SDGEYNLTTV  120
CLDHNHPLCP TTARRIRQYR ELDQHSKDRF CFNEDAGVRQ SKSYHAILTE KGGYANLGYS  180
ERDARNFIDK RRRLKLQSGD ADALHRYFIM MQKNNPNFFY SMDLDEEGRL RNLFWADARS  240
RAACEDFGDV ITFDTTCLTN KYDMPFAPFV GVNHHGQSLL LGCGLLCDET TMSFTWLFEV  300
WKTCMKGKSP NAIITDQCAA MKNAIEVVFP DAKHRLCLWH IMEKIPKKLR GYKKEYEEIK  360
TIMTDAVYET LIILEELSKD FGGVIFDHKM YSTDIIPLAK VVKQTNT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190194KRRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.13e-65FAR1 family protein