PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002640.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 379aa MW: 42494.2 Da PI: 9.8349

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002640.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.9	1e-12	11	56	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l++ vk+ G+++W++I ++ + Rt+k+c++rw + Rmu_sc0002640.1_g000007.1 11 KGPWKAEEDEVLLNHVKKCGPRDWSSIRSKGLLQRTGKSCRLRWVN 56 79***********************8887799********87 PP
2	Myb_DNA-binding	43.2	9e-14	67	106	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +++ eE+ +++ +q+G++ W++Ia +++ gRt++++k++w Rmu_sc0002640.1_g000007.1 67 KFSLEEERVVIELQAQFGNK-WAKIATHLP-GRTDNDVKNFW 106 799***************.*****.********* PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MEGKREEGIR KGPWKAEEDE VLLNHVKKCG PRDWSSIRSK GLLQRTGKSC RLRWVNKLRP 60 NLKNGCKFSL EEERVVIELQ AQFGNKWAKI ATHLPGRTDN DVKNFWSSRQ KRLARILQTS 120 TAAITPSKSH KNRREISVYH DEVPTLEIPK FSCSSEGKSS SQAASCSSPC IGNSDAIQMV 180 PLPDLLDSKL LGFEANPVQQ ELALPEKNLW IESQLHSPNY FQKVYNASQS PFELHTCTLA 240 APSDLHGHAL STTFEIYAQA SAASPSVNGH TSATPGDKIM NPTNYKTMIS LIPPRVRRQS 300 NETLDATTDR VFSPFHSQQD PTRITCLRDL GDWELGGRSH ARRALSDHFA VHSRCLPKKI 360 KSPPKRTIDW GLGRLVDVT

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MEGKREEGIR KGPWKAEEDE VLLNHVKKCG PRDWSSIRSK GLLQRTGKSC RLRWVNKLRP  60
NLKNGCKFSL EEERVVIELQ AQFGNKWAKI ATHLPGRTDN DVKNFWSSRQ KRLARILQTS  120
TAAITPSKSH KNRREISVYH DEVPTLEIPK FSCSSEGKSS SQAASCSSPC IGNSDAIQMV  180
PLPDLLDSKL LGFEANPVQQ ELALPEKNLW IESQLHSPNY FQKVYNASQS PFELHTCTLA  240
APSDLHGHAL STTFEIYAQA SAASPSVNGH TSATPGDKIM NPTNYKTMIS LIPPRVRRQS  300
NETLDATTDR VFSPFHSQQD PTRITCLRDL GDWELGGRSH ARRALSDHFA VHSRCLPKKI  360
KSPPKRTIDW GLGRLVDVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	1e-70	MYB family protein