PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002636.1_g000029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 188aa MW: 20960.7 Da PI: 6.9131 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.6 | 1.2e-11 | 63 | 98 | 15 | 49 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE.EEEE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgk.lyey 49 R++ ++KKAeELS LC+++v++i++ + + + ++ Rmu_sc0002636.1_g000029.1 63 DRKKNLIKKAEELSKLCGVDVCLILYQRHSTiVETW 98 6***********************998766514455 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
MYSNWSAISM WHFIRADLHR NELAAMLQGQ QACDDAAGAV GGTRVLKDCM SSSRKSDRKK 60 VRDRKKNLIK KAEELSKLCG VDVCLILYQR HSTIVETWPQ DPAEVKRIIT GYKANPGIRD 120 ASIPSSETKG LEETKAGKSH SGRETVVNSD EEREMLYPTW DDGLGYCSED ELIRLVASLD 180 AKLEASAN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 3e-14 | M-type_MADS family protein |