PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G58890.1 | ||||||||
Common Name | AGL82 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 294aa MW: 34165.9 Da PI: 9.274 | ||||||||
Description | AGAMOUS-like 82 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.7 | 5.3e-17 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ri n+ r +t+ kR++ + KKA+E S+LC++e ++i++++t AT5G58890.1 10 RIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPT 51 89**************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-12 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.858 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.01E-25 | 3 | 81 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-17 | 6 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-16 | 10 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020090 | anatomy | embryo sac central cell | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MVPKVVDLQR IANDKTRITT YKKRKASLYK KAQEFSTLCG VETCLIVYGP TKATDVVISE 60 PEIWPKDETK VRAIIRKYKD TVSTSCRKET NVETFVNDVG KGNEVVTKKR VKRENKYSSW 120 EEKLDKCSRE QLHGIFCAVD SKLNEAVTRQ ERSMFRVNHQ AMDTPFPQNL MDQQFMPQYF 180 HEQPQFQGFP NNFNNMGFSL ISPHDGQIQM DPNLMEKWTD LALTQSLMMS KGNDGTQFMQ 240 RQEQPYYNRE QVVSRSAGFN VNPFMGYQVP FNIPNWRLSG NQVENWELSG KKTI |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18424168 | 0.0 | ||||
Genevisible | 247767_at | 0.0 | ||||
Expression Atlas | AT5G58890 | - | ||||
AtGenExpress | AT5G58890 | - | ||||
ATTED-II | AT5G58890 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G58890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G31630, AT1G46408, AT1G47760, AT1G48150, AT1G77980 | |||||
IntAct | Search Q9FIM0 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G58890 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016885 | 0.0 | AB016885.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19M22. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_200697.1 | 0.0 | AGAMOUS-like 82 | ||||
Swissprot | Q9FIM0 | 0.0 | AGL82_ARATH; Agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A178URD6 | 0.0 | A0A178URD6_ARATH; AGL82 | ||||
STRING | AT5G58890.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5948 | 19 | 47 | Representative plant | OGRP3677 | 6 | 21 |
Link Out ? help Back to Top | |
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Phytozome | AT5G58890.1 |
Entrez Gene | 836006 |
iHOP | AT5G58890 |
wikigenes | AT5G58890 |