PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002616.1_g000020.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 883aa MW: 96362.6 Da PI: 4.7888

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002616.1_g000020.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.6e-12	711	756	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI +L Rmu_sc0002616.1_g000020.1 711 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYITEL 756 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 883 aa Download sequence
MNLWTDDNAS LMEAFMSNSD LTSFWAAQPA QPATQPAHPL HQPQSSASTS DYPRPPAAQS 60 QSQSQPPPPP PAAAPFNQET LMQRLQALID GARESWTYAI FWQSSYEMSG ASVLGWGEGF 120 YKDERDKVKA KPKTTASLVE QEYRKKVLRD LNSLISGADN TAEDDVVDQE VTDTEWFFLV 180 SMTQNFVNGV GLPGQAFFQS NPVWVAGPDR LADSACERAR QGQMFGLQTM VCVPTANGVV 240 ELGSTELIYQ SADLMNKVRV LFDFNNLEVG SWPMGGAADQ GENDPSSLWI NDNPASTIEV 300 VKDSVHMGPA TSGPSTSNHQ ISKPIQFDSH PSSSGLSENP SAVLQVQSQS NHHPGADNTA 360 EDDVVDQEVT DTEWFFLVSM TQNFVNGVGL PGQAFFQSNP VWVAGPDRLA DSACERARQG 420 QMFGLQTMVC VPTANGVVEL GSTELIYQSA DLMNKVRVLF DFNNLEVGSW PMGGAADQGE 480 NDPSSLWIND NPASTIEVVK DSVHMGPATS GPSTSNHQIS KPIQFDSHPS SSGLSENPSA 540 VLQVQSQSNH HNQAQQQVQT QSFFTRELNF SDYNGYDGSS VKNSNSNSHS LKPESGEILN 600 FGESKRTSYS ANNGKLFSAQ SQIAAEDNNK KKRSPPSRGS NDEGILSFSS GVILPSSSGV 660 VKSSAGPVDS DHSDLEASVA READSSRVVD PEKRPRKRGR KPANGREEPL NHVEAERQRR 720 EKLNQRFYAL RAVVPNVSKM DKASLLGDAI SYITELKTKL QTTESDKEDL HKQVETLSKE 780 LQESRTSSGL DQELKGSNKL IDLDIDVKIL GWDARIQIQC SKKNHPAARL MAALMELDLD 840 VHHASVSVVN DLMIQQATVR MGSRVYTQEQ LRLALSAKVG DAR

Sequence ? help Back to Top

Protein Sequence Length: 883 aa Download sequence

MNLWTDDNAS LMEAFMSNSD LTSFWAAQPA QPATQPAHPL HQPQSSASTS DYPRPPAAQS  60
QSQSQPPPPP PAAAPFNQET LMQRLQALID GARESWTYAI FWQSSYEMSG ASVLGWGEGF  120
YKDERDKVKA KPKTTASLVE QEYRKKVLRD LNSLISGADN TAEDDVVDQE VTDTEWFFLV  180
SMTQNFVNGV GLPGQAFFQS NPVWVAGPDR LADSACERAR QGQMFGLQTM VCVPTANGVV  240
ELGSTELIYQ SADLMNKVRV LFDFNNLEVG SWPMGGAADQ GENDPSSLWI NDNPASTIEV  300
VKDSVHMGPA TSGPSTSNHQ ISKPIQFDSH PSSSGLSENP SAVLQVQSQS NHHPGADNTA  360
EDDVVDQEVT DTEWFFLVSM TQNFVNGVGL PGQAFFQSNP VWVAGPDRLA DSACERARQG  420
QMFGLQTMVC VPTANGVVEL GSTELIYQSA DLMNKVRVLF DFNNLEVGSW PMGGAADQGE  480
NDPSSLWIND NPASTIEVVK DSVHMGPATS GPSTSNHQIS KPIQFDSHPS SSGLSENPSA  540
VLQVQSQSNH HNQAQQQVQT QSFFTRELNF SDYNGYDGSS VKNSNSNSHS LKPESGEILN  600
FGESKRTSYS ANNGKLFSAQ SQIAAEDNNK KKRSPPSRGS NDEGILSFSS GVILPSSSGV  660
VKSSAGPVDS DHSDLEASVA READSSRVVD PEKRPRKRGR KPANGREEPL NHVEAERQRR  720
EKLNQRFYAL RAVVPNVSKM DKASLLGDAI SYITELKTKL QTTESDKEDL HKQVETLSKE  780
LQESRTSSGL DQELKGSNKL IDLDIDVKIL GWDARIQIQC SKKNHPAARL MAALMELDLD  840
VHHASVSVVN DLMIQQATVR MGSRVYTQEQ LRLALSAKVG DAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	693	701	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-134	bHLH family protein