PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G32640.1

Common Name

ATMYC2, BHLH6, EN38, F6N18.4, JAI1, JIN1, MYC2, RAP1, RD22BP1, ZBF1

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 623aa MW: 67949.8 Da PI: 5.0247

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G32640.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39	1.5e-12	452	497	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L AT1G32640.1 452 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 497 799*********************6.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.3E-56	68	252	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	7.07E-17	447	514	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.111	448	497	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.34E-14	451	501	No hit	No description
Pfam	PF00010	5.1E-10	452	497	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-17	452	518	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-16	454	503	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009269	Biological Process	response to desiccation
GO:0009611	Biological Process	response to wounding
GO:0009737	Biological Process	response to abscisic acid
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0009963	Biological Process	positive regulation of flavonoid biosynthetic process
GO:0010200	Biological Process	response to chitin
GO:0043619	Biological Process	regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0051090	Biological Process	regulation of sequence-specific DNA binding transcription factor activity
GO:2000068	Biological Process	regulation of defense response to insect
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000005	anatomy	cultured plant cell
PO:0000013	anatomy	cauline leaf
PO:0000017	anatomy	vascular leaf primordium
PO:0000037	anatomy	shoot apex
PO:0000230	anatomy	inflorescence meristem
PO:0000256	anatomy	root hair cell
PO:0000293	anatomy	guard cell
PO:0008019	anatomy	leaf lamina base
PO:0009005	anatomy	root
PO:0009006	anatomy	shoot system
PO:0009009	anatomy	plant embryo
PO:0009010	anatomy	seed
PO:0009025	anatomy	vascular leaf
PO:0009029	anatomy	stamen
PO:0009030	anatomy	carpel
PO:0009031	anatomy	sepal
PO:0009032	anatomy	petal
PO:0009046	anatomy	flower
PO:0009047	anatomy	stem
PO:0009052	anatomy	flower pedicel
PO:0020030	anatomy	cotyledon
PO:0020038	anatomy	petiole
PO:0020100	anatomy	hypocotyl
PO:0020137	anatomy	leaf apex
PO:0025022	anatomy	collective leaf structure
PO:0025195	anatomy	pollen tube cell
PO:0025281	anatomy	pollen
PO:0001054	developmental stage	vascular leaf senescent stage
PO:0001078	developmental stage	plant embryo cotyledonary stage
PO:0001081	developmental stage	mature plant embryo stage
PO:0001185	developmental stage	plant embryo globular stage
PO:0004507	developmental stage	plant embryo bilateral stage
PO:0007064	developmental stage	LP.12 twelve leaves visible stage
PO:0007095	developmental stage	LP.08 eight leaves visible stage
PO:0007098	developmental stage	LP.02 two leaves visible stage
PO:0007103	developmental stage	LP.10 ten leaves visible stage
PO:0007115	developmental stage	LP.04 four leaves visible stage
PO:0007123	developmental stage	LP.06 six leaves visible stage
PO:0007611	developmental stage	petal differentiation and expansion stage
PO:0007616	developmental stage	flowering stage

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence Send to blast
MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ 60 AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV LGWGDGYYKG EEDKANPRRR 120 SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA 180 GLAGKAFATG NAVWVSGSDQ LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ 240 SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS 300 SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK 360 PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV LNEDKVLSFG DKTAGESDHS 420 DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK 480 MDKASLLGDA IAYINELKSK VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS 540 IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA 600 TVKMGFRIYT QEQLRASLIS KIG

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence Send to blast

MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ  60
AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV LGWGDGYYKG EEDKANPRRR  120
SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA  180
GLAGKAFATG NAVWVSGSDQ LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ  240
SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS  300
SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK  360
PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV LNEDKVLSFG DKTAGESDHS  420
DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK  480
MDKASLLGDA IAYINELKSK VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS  540
IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA  600
TVKMGFRIYT QEQLRASLIS KIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	3e-73	60	255	1	195	Transcription factor MYC3
4rqw_B	3e-73	60	255	1	195	Transcription factor MYC3
4rs9_A	3e-73	60	255	1	195	Transcription factor MYC3
4yz6_A	3e-73	60	255	1	195	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	433	441	KRPKKRGRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.22648	0.0	flower\| inflorescence\| leaf\| root\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	261713_at	0.0
Expression Atlas	AT1G32640	-
AtGenExpress	AT1G32640	-
ATTED-II	AT1G32640	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed in the whole plant with the highest expression in stem. Constitutively expressed in dark- and light-grown seedlings. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:15923349}.

Functional Description ? help Back to Top
Source	Description
TAIR	Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression.
UniProt	Transcriptional activator. Common transcription factor of light, abscisic acid (ABA), and jasmonic acid (JA) signaling pathways. With MYC3 and MYC4, controls additively subsets of JA-dependent responses. In cooperation with MYB2 is involved in the regulation of ABA-inducible genes under drought stress conditions. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the MYC recognition site (5'-CACATG-3'), and to the G-box (5'-CACNTG-3') and Z-box (5'-ATACGTGT-3') of promoters. Binds directly to the promoters of the transcription factors PLETHORA1 (PLT1) and PLT2 and represses their expression. Negative regulator of blue light-mediated photomorphogenic growth and blue- and far-red-light regulated gene expression. Activates multiple TIFY/JAZ promoters. Positive regulator of lateral root formation. Regulates sesquiterpene biosynthesis. Subjected to proteasome-dependent proteolysis. The presence of the destruction element (DE) involved in turnover is required for the function to regulate gene transcription. {ECO:0000269\|PubMed:12509522, ECO:0000269\|PubMed:15208388, ECO:0000269\|PubMed:15923349, ECO:0000269\|PubMed:21321051, ECO:0000269\|PubMed:21335373, ECO:0000269\|PubMed:21954460, ECO:0000269\|PubMed:22669881, ECO:0000269\|PubMed:23142764, ECO:0000269\|PubMed:23593022, ECO:0000269\|PubMed:23943862, ECO:0000269\|PubMed:9368419}.

Function -- GeneRIF ? help Back to Top
The role of jasmonate and salicylic acid signaling in susceptibility to P. syringae infection in A. thaliana mutants is reported. [PMID: 16838791] These results provide new insights into the function of MYC2 and the transcriptional coordination of the jasmonic acid signaling pathway. [PMID: 17616737] results pinpoint MYC2 as a potential regulator in priming for enhanced JA-responsive gene expression during rhizobacteria-mediated ISR [PMID: 18657213] MYC2 and SPA1 act redundantly to suppress photomorphogenic growth in the dark. [PMID: 20864543] High- and medium-affinity binding sites are over-represented in promoters of MYC2- or ERF1 (ethylene-responsive transcription factor 1B)-regulated genes, and therefore they may represent new cis-regulatory elements. [PMID: 21284757] The jasmonate-responsive activity of the jasmonate-responsive element from the ORCA3 promoter interacts in vitro and in vivo with the basic helix-loop-helix transcription factor AtMYC2. [PMID: 21306988] MYC3 and MYC4, act additively with MYC2 in the activation of jasmonic acid responses. [PMID: 21335373] demonstrated the genetic and molecular relationships of MYC2 and SPA1 in light and JA (jasmonic acid) signaling pathways. Here, we have further shown the genetic interactions between these two proteins in flowering time and lateral root development [PMID: 21512327] EDR1 exerts a positive and critical role in resistance responses to hemibiotrophic/necrotrophic fungi, in part by inducing antifungal protein expression through derepression of MYC2 function. [PMID: 21605210] MYC2-mediated repression of PLT expression is involved in jasmonate inhibition of primary root growth. [PMID: 21954460] MYC2 acts as a negative regulator of light induced gene expression. [PMID: 22424472] MYC2 interacts with RGA proteinsin regulating sesquiterpene synthase gene expression [PMID: 22669881] jasmonic acid predominantly promotes MYC2 protein accumulation in the morning and TIME FOR COFFEE represses accumulation of the MYC2 [PMID: 22693280] During jasmonate signaling, MED25 physically associates with the basic helix-loop-helix transcription factor MYC2 in promoter regions of MYC2 target genes and exerts a positive effect on MYC2-regulated gene transcription. [PMID: 22822206] MYC2 regulates RGL3 expression through a direct association with its promotor. [PMID: 22892320] Together, these results reveal that phosphorylation-coupled turnover of MYC2 stimulates its transcription activity. [PMID: 23593022] these results provide insights into SPA1- and MYC2-mediated transcriptional regulation of the Z- and G-box containing promoters in light signaling pathways. [PMID: 23646119] Data indicate that JAM1 (AT2G46510) and MYC2 competitively bind to the target sequence of MYC2, which likely provides the mechanism for negative regulation of jasmonates (JAs) signaling and suppression of MYC2 functions by JAM1. [PMID: 23673982] MYC2 differentially regulates GATA-box conaining promoters during seedling development in Arabidopsis [PMID: 23857363] MYC2/MYC3/MYC4 are necessary for direct transcriptional activation of GS biosynthesis genes. [PMID: 23943862] MYC2 interacts with EIN3 to attenuate the transcriptional activity of EIN3 and repress ET-enhanced apical hook curvature. [PMID: 24399301] MYC2 physically interacts with EIN3 and inhibits its DNA binding activity [PMID: 24668749] AKIN10 negatively modulates AtMYC2 protein accumulation via proteasome activity upon AKIN10 kinase activity-dependent protein modification. Transgenic plants expressing AKIN10 indicates that AKIN10 activity undermined AtMYC2-dependent salt tolerance. [PMID: 24890857] regulator of glucosinolate biosynthesis [PMID: 25049362] MKK3-MPK6 is activated by blue light in a MYC2-dependent manner. [PMID: 25139007] A lower expression level of WRKY70 leads to significantly higher MYC2 expression through salicylic acid (SA)-jasmonic acid (JA) cross-talk. [PMID: 25339349] JAZ1 and JAZ10 were the only JAZ proteins still showing interaction with the mutant MYC proteins, due to a second MYC interaction domain, besides the classical Jas domain. [PMID: 25817565] This study reveals that MYC2 and GBF1 colocalize and physically interact in the nucleus. This interaction requires the N-terminal domain of each protein. [PMID: 26047210] MYC2 is targeted by PUB10 for degradation during jasmonic acid responses. [PMID: 26163577] MYC2 interacts with ANAC019 to co-regulate the expression of NYE1 during jasmonic acid-induced chlorophyll degradation. [PMID: 26407000] allantoin can activate the MYC2-regulated jasmonic acid signaling pathway through abscissic acid production. [PMID: 26931169] Under salt stress, JA almost did not render a positive effect on the jin1 plants. It is concluded that the protein JIN1/MYC2 is involved in control of protective systems under salt stress. [PMID: 27266252] The authors report a link between abscisic acid (ABA) and jasmonic Acid (JA) signaling through a direct interaction of the ABA receptor PYL6 (RCAR9) with the basic helix-loop-helix transcription factor MYC2. PYL6 and MYC2 interact in yeast two hybrid assays and the interaction is enhanced in the presence of ABA. [PMID: 27357749] The function of MYC2, MYC3, and MYC4 in seed development and seed storage protein accumulation [PMID: 27415132] the 2.7 A crystal structure of the MYC2 bHLH domain complexed with G-box DNA, showing a cis-tetrameric structure, is reported. [PMID: 28514654] The Deubiquitinating Enzymes UBP12 and UBP13 Positively Regulate MYC2 Levels in Jasmonate Responses [PMID: 28536144]

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00084	PBM	26531826	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G32640.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Detected early after abscisic acid (ABA) treatment or after dehydration and high-salt stresses. Induced by UV treatment. Up-regulated by methyl jasmonate and herbivory. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:15208388, ECO:0000269\|PubMed:23593022, ECO:0000269\|PubMed:23943862, ECO:0000269\|PubMed:9368419}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Regulation -- ATRM (Manually Curated Upstream Regulators) ? help Back to Top
Source	Upstream Regulator (A: Activate/R: Repress)
ATRM	AT1G32640 (R), AT4G25470 (R)

Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top
Source	Target Gene (A: Activate/R: Repress)
ATRM	AT1G17420(A), AT1G18570(R), AT1G19180(A), AT1G27730(R), AT1G28370(R), AT1G29930(A), AT1G32640(R), AT1G33760(R), AT1G67090(A), AT1G72260(R), AT1G77120(A), AT2G14610(R), AT2G24850(A), AT2G46340(A), AT3G04720(R), AT3G12500(R), AT3G15210(R), AT3G16470(A), AT3G23240(R), AT3G45140(A), AT4G17490(R), AT5G07100(R), AT5G24770(A), AT5G24780(A), AT5G25610(A), AT5G44420(R), AT5G47220(R)

Regulation -- Hormone ? help Back to Top
Source	Hormone
AHD	abscisic acid, jasmonic acid

Interaction ? help Back to Top
Source	Intact With
BioGRID	AT1G32640, AT1G66350, AT1G74080
IntAct	Search Q39204

Phenotype -- Disruption Phenotype ? help Back to Top
Source	Description
UniProt	DISRUPTION PHENOTYPE: Minor effect on jasmonic acid response and no effect on glucosinolate biosynthesis, but decreased abscisic acid sensitivity. Myc2 and myc3 double mutant has an increased insensitivity to jasmonic acid. Myc2 and myc4 double mutant has an increased insensitivity to jasmonic acid. Myc2, myc3 and myc4 triple mutant has no jasmonate-related defense response, is devoid of glucosinolates and is extremely susceptible to generalist herbivores. {ECO:0000269\|PubMed:12509522, ECO:0000269\|PubMed:15208388, ECO:0000269\|PubMed:21335373, ECO:0000269\|PubMed:23943862}.

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G32640

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC017118	0.0	AC017118.3 Genomic sequence for Arabidopsis thaliana BAC F6N18 from chromosome I, complete sequence.
GenBank	AJ843256	0.0	AJ843256.1 Arabidopsis thaliana mRNA for Z-box binding factor 1 protein (ZBF1 gene).
GenBank	AY037203	0.0	AY037203.1 Arabidopsis thaliana At1g32640/F6N18_4 mRNA, complete cds.
GenBank	BT003042	0.0	BT003042.1 Arabidopsis thaliana At1g32640/F6N18_4 gene, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	X99548	0.0	X99548.2 Arabidopsis thaliana mRNA for bHLH protein (Rap-1 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_174541.1	0.0	Basic helix-loop-helix (bHLH) DNA-binding family protein
Swissprot	Q39204	0.0	MYC2_ARATH; Transcription factor MYC2
TrEMBL	A0A178W7C3	0.0	A0A178W7C3_ARATH; ZBF1
STRING	AT1G32640.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1265	28	96
Representative plant	OGRP3733	12	24

Link Out ? help Back to Top
Phytozome	AT1G32640.1
Entrez Gene	840158
iHOP	AT1G32640
wikigenes	AT1G32640

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Gong Z, et al. Genes that are uniquely stress regulated in salt overly sensitive (sos) mutants. Plant Physiol., 2001. 126(1): p. 363-75 [PMID:11351099] Abe H, et al. Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell, 2003. 15(1): p. 63-78 [PMID:12509522] Heim MA, et al. The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol. Biol. Evol., 2003. 20(5): p. 735-47 [PMID:12679534] Yamashino T, et al. A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana. Plant Cell Physiol., 2003. 44(6): p. 619-29 [PMID:12826627] Toledo-Ortiz G,Huq E,Quail PH The Arabidopsis basic/helix-loop-helix transcription factor family. Plant Cell, 2003. 15(8): p. 1749-70 [PMID:12897250] Yamada K, et al. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] Li L, et al. The tomato homolog of CORONATINE-INSENSITIVE1 is required for the maternal control of seed maturation, jasmonate-signaled defense responses, and glandular trichome development. Plant Cell, 2004. 16(1): p. 126-43 [PMID:14688297] Lorenzo O,Chico JM,S JASMONATE-INSENSITIVE1 encodes a MYC transcription factor essential to discriminate between different jasmonate-regulated defense responses in Arabidopsis. Plant Cell, 2004. 16(7): p. 1938-50 [PMID:15208388] Boter M,Ru Conserved MYC transcription factors play a key role in jasmonate signaling both in tomato and Arabidopsis. Genes Dev., 2004. 18(13): p. 1577-91 [PMID:15231736] Anderson JP, et al. Antagonistic interaction between abscisic acid and jasmonate-ethylene signaling pathways modulates defense gene expression and disease resistance in Arabidopsis. Plant Cell, 2004. 16(12): p. 3460-79 [PMID:15548743] Yadav V,Mallappa C,Gangappa SN,Bhatia S,Chattopadhyay S A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Plant Cell, 2005. 17(7): p. 1953-66 [PMID:15923349] Lorenzo O,Solano R Molecular players regulating the jasmonate signalling network. Curr. Opin. Plant Biol., 2005. 8(5): p. 532-40 [PMID:16039901] Laurie-Berry N,Joardar V,Street IH,Kunkel BN The Arabidopsis thaliana JASMONATE INSENSITIVE 1 gene is required for suppression of salicylic acid-dependent defenses during infection by Pseudomonas syringae. Mol. Plant Microbe Interact., 2006. 19(7): p. 789-800 [PMID:16838791] Megraw M, et al. MicroRNA promoter element discovery in Arabidopsis. RNA, 2006. 12(9): p. 1612-9 [PMID:16888323] Truman W,Bennett MH,Kubigsteltig I,Turnbull C,Grant M Arabidopsis systemic immunity uses conserved defense signaling pathways and is mediated by jasmonates. Proc. Natl. Acad. Sci. U.S.A., 2007. 104(3): p. 1075-80 [PMID:17215350] Takahashi F, et al. The mitogen-activated protein kinase cascade MKK3-MPK6 is an important part of the jasmonate signal transduction pathway in Arabidopsis. Plant Cell, 2007. 19(3): p. 805-18 [PMID:17369371] Dombrecht B, et al. MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis. Plant Cell, 2007. 19(7): p. 2225-45 [PMID:17616737] Chini A, et al. The JAZ family of repressors is the missing link in jasmonate signalling. Nature, 2007. 448(7154): p. 666-71 [PMID:17637675] Thines B, et al. JAZ repressor proteins are targets of the SCF(COI1) complex during jasmonate signalling. Nature, 2007. 448(7154): p. 661-5 [PMID:17637677] Yan Y, et al. A downstream mediator in the growth repression limb of the jasmonate pathway. Plant Cell, 2007. 19(8): p. 2470-83 [PMID:17675405] Libault M,Wan J,Czechowski T,Udvardi M,Stacey G Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11 [PMID:17722694] Chawade A,Br Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors. BMC Genomics, 2007. 8: p. 304 [PMID:17764576] Wang Z, et al. Identification and characterization of COI1-dependent transcription factor genes involved in JA-mediated response to wounding in Arabidopsis plants. Plant Cell Rep., 2008. 27(1): p. 125-35 [PMID:17786451] Balbi V,Devoto A Jasmonate signalling network in Arabidopsis thaliana: crucial regulatory nodes and new physiological scenarios. New Phytol., 2008. 177(2): p. 301-18 [PMID:18042205] Wu K,Zhang L,Zhou C,Yu CW,Chaikam V HDA6 is required for jasmonate response, senescence and flowering in Arabidopsis. J. Exp. Bot., 2008. 59(2): p. 225-34 [PMID:18212027] Pauwels L, et al. Mapping methyl jasmonate-mediated transcriptional reprogramming of metabolism and cell cycle progression in cultured Arabidopsis cells. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(4): p. 1380-5 [PMID:18216250] Chung HS, et al. Regulation and function of Arabidopsis JASMONATE ZIM-domain genes in response to wounding and herbivory. Plant Physiol., 2008. 146(3): p. 952-64 [PMID:18223147] Staswick PE JAZing up jasmonate signaling. Trends Plant Sci., 2008. 13(2): p. 66-71 [PMID:18261950] Bu Q, et al. Role of the Arabidopsis thaliana NAC transcription factors ANAC019 and ANAC055 in regulating jasmonic acid-signaled defense responses. Cell Res., 2008. 18(7): p. 756-67 [PMID:18427573] Melotto M, et al. 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