PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002407.1_g000015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 27742.5 Da PI: 4.7638 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 64 | 114 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a++ ++g Rmu_sc0002407.1_g000015.1 64 PVYRGVRMRA-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALTIKG 114 68*****998.**********854...59*********************98875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence |
MTTDPSHSET TTTTESTSFN SSSFSSSASP RSPGQNNPSP GDSNPNDEKR VSSKRARESS 60 SKHPVYRGVR MRAWGKWVSE IREPRKKNRI WLGTFSTPEM AARAHDVAAL TIKGDSAILN 120 FPALSGSLPR PDSNSPRDIQ AAAAKAASMD PSPTPPPRPP PSATLSQSSS SSSMADAGTP 180 EELGEIVELP SLGTSYESAE SEFVFEDSVE GWLYPPQPWW QNGYFGEEYG YIRNYDMIMA 240 PEPALCVEDL LWQH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 8e-56 | ERF family protein |