PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002349.1_g000024.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 359aa    MW: 41746.7 Da    PI: 10.0574
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002349.1_g000024.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.92.7e-13645342
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               i n++ +  tf k ++g+lKK  E+ +LCd+++avii+s+
  Rmu_sc0002349.1_g000024.1  6 IANETFKRMTFRKGKKGLLKKVGEITTLCDIKAAVIIYSP 45
                               8899999********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MRLHYIANET FKRMTFRKGK KGLLKKVGEI TTLCDIKAAV IIYSPFDAEL EVFPSHPEVH  60
EMVTKFRDMP QMDKTRKLIN QETFLRQRID KVREHIRKQR RDNQEKEITQ VLKKVGEITI  120
LCDIKVAAII YIPFDSKPKV FPSHPEVHEM VTKFRDMPQM DKMRKLINQE TFLRQRIDKI  180
REQIIKKRRD NREKEITQVL KKVGKITTLC DIKAAAIIYS PFDAKSKVFP NSGREEGRKY  240
HTRDSRPRQL LLSERYINIW CLEEGTFLVN STIGLTAMVE INNANDVLKS GDRPQGILNF  300
LPIDGEISTF SPDGSVTHIT DTVVALEIAK KDLLQFKEQA VRQQCCCNSY PEPCKGVRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186205KKRRDNREKEITQVLKKVGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-28M-type_MADS family protein