PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002260.1_g000004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 405aa MW: 45852.8 Da PI: 7.0073 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l ++++++G g+W++ ++ g+ R++k+c++rw +yl Rmu_sc0002260.1_g000004.1 14 RGRWTAEEDEILTNYIQLHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3.1e-18 | 108 | 153 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+e +v++++ lG++ W++Ia++++ gRt++++k++w+++l Rmu_sc0002260.1_g000004.1 108 RGNITQEEEETIVKLHTALGNR-WSLIAAHLP-GRTDNEIKNYWNSHL 153 7999******************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence |
MGRAPCCEKV GLKRGRWTAE EDEILTNYIQ LHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRTDLRRGNI TQEEEETIVK LHTALGNRYV IMHAPHHLLY ILRTDLRRGN ITQEEEETIV 120 KLHTALGNRW SLIAAHLPGR TDNEIKNYWN SHLSRKIYTF TKLMKNECLI PTMINNVSKL 180 AAAKSKRRVR TSRSAMKSKN KLNKNGTVLA PFPQVPNPAY KSDVFESLTR ENPNQVQTSH 240 SMGLECWAPK ERDEKEEEEK TIRTLGGMQG SCLDITAGMI SSTTPVIYAA NNGEKEALDP 300 YECVDSDVIV DHNPSGSTNV VRENGVMGFT DDHEVTIKSH QGIWSSNIEG SCGEMYAFSS 360 PLNAAFDDHE WLDCDWFGGG GGGLQCHNDE LELWGEREVR IPWLR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-69 | MYB family protein |