PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002119.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 562aa MW: 62682.5 Da PI: 4.3723

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002119.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.3	1.3e-31	11	149	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkya..tg 71 +rF P+deelv++yL+kk ++k+ e + +i+ ++++++ P+dL + +++ + e yf+s+r k++ ++ Rmu_sc0002119.1_g000006.1 11 LRFLPSDEELVSDYLEKKNQQKDPESKAIISVFNVCEHGPSDLAAlvprvkfldreweftVADSPDMERYFYSPRVFKHNksKS 94 79*******************9998889999******85688899999988764334456699*9776652268 PP NAM 72 krknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +r+nr+tk+gyWk++gkd++++++ ++e++g k++L+fy + + +ktdWv+hey l Rmu_sc0002119.1_g000006.1 95 TRSNRKTKEGYWKQQGKDRRITRArSDEQIGGKRILTFYLQ---DKQKTDWVIHEYYL 149 8*****************9867889******43...3358******87 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MMSCITLHKD LRFLPSDEEL VSDYLEKKNQ QKDPESKAII SVFNVCEHGP SDLAALVPRV 60 KFLDREWEFT VADSPDMERY FYSPRVFKHN KSKSTRSNRK TKEGYWKQQG KDRRITRARS 120 DEQIGGKRIL TFYLQDKQKT DWVIHEYYLT KANSDEQIGD FVLCRLKNKS GKSDHDQQDD 180 PLCDGGEPNS GSCSMVSNVE HQGSKELGTV LPIPKGNNDE AEHGGGSCSM AFDVENQASK 240 HLENYLPIPN GNDNEAEHDK DAPFFDRGST SCSMASNVEN QAEENWASIE QVNVVPIPNG 300 NGDEAETGGG MITEEEEYLA LKELENALQS PIGNPHEFQG TQTDPCHIDK NDLSTSVEGR 360 PDKSNLSDMI EELLDDPENL DSLFDTPAPP QLHQPPMYTT NDHNDECRKR AYPFEDNEPS 420 LVKKKNISTN DDDELVSKTA SSSENQAANI NMIQERYSQQ GVNLGSDFDS FLPKDYDYTL 480 PSINGGPGDF PHDNNFIEWD DLPSLYEGMD YSPAKFSHTV IDGGKGVTSD GNTEVVDGSA 540 YKDVSSHKQF LGGGASSVNI TT

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MMSCITLHKD LRFLPSDEEL VSDYLEKKNQ QKDPESKAII SVFNVCEHGP SDLAALVPRV  60
KFLDREWEFT VADSPDMERY FYSPRVFKHN KSKSTRSNRK TKEGYWKQQG KDRRITRARS  120
DEQIGGKRIL TFYLQDKQKT DWVIHEYYLT KANSDEQIGD FVLCRLKNKS GKSDHDQQDD  180
PLCDGGEPNS GSCSMVSNVE HQGSKELGTV LPIPKGNNDE AEHGGGSCSM AFDVENQASK  240
HLENYLPIPN GNDNEAEHDK DAPFFDRGST SCSMASNVEN QAEENWASIE QVNVVPIPNG  300
NGDEAETGGG MITEEEEYLA LKELENALQS PIGNPHEFQG TQTDPCHIDK NDLSTSVEGR  360
PDKSNLSDMI EELLDDPENL DSLFDTPAPP QLHQPPMYTT NDHNDECRKR AYPFEDNEPS  420
LVKKKNISTN DDDELVSKTA SSSENQAANI NMIQERYSQQ GVNLGSDFDS FLPKDYDYTL  480
PSINGGPGDF PHDNNFIEWD DLPSLYEGMD YSPAKFSHTV IDGGKGVTSD GNTEVVDGSA  540
YKDVSSHKQF LGGGASSVNI TT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-17	NAC family protein