PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002096.1_g000035.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 163aa    MW: 19131.8 Da    PI: 4.7516
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002096.1_g000035.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.75.4e-12961231542
                                HHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  15 kRrngilKKAeELSvLCdaevaviifss 42 
                                kR++g+lKK +E+ +LCd+++a ii+s+
  Rmu_sc0002096.1_g000035.1  96 KRKEGLLKKVYEITTLCDIKAAAIIYSP 123
                                9**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MKTISRAAAA EPEEELGVIE KRECGAEEWD LGFSQKSKPE SNQEFLLCCL RNEEREAVTE  60
KTLVRFEDVR DIERSLELGR YVLTAEEAGK REWRRKRKEG LLKKVYEITT LCDIKAAAII  120
YSPFDFELEV FPSHFEVHEM LMRFQDMSEK DKTKNMVNQE AFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499RRKRKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27810.11e-14M-type_MADS family protein