PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G27810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 119aa MW: 13848.8 Da PI: 5.7068 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.4 | 9e-09 | 1 | 28 | 21 | 48 |
HHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklye 48 +KK +ELS+LC++ + ii+s+ ++ +e AT5G27810.1 1 MKKVHELSTLCGITSCAIIYSPYDTSHE 28 8********************9877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00266 | 7.60E-18 | 1 | 57 | No hit | No description |
SuperFamily | SSF55455 | 1.29E-12 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-6 | 1 | 25 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MKKVHELSTL CGITSCAIIY SPYDTSHEVW PSNSGVQRVV SEFRTLPEMD QHKKMVDQEG 60 FLKQRIAKPT ENLRRQRKDN KELEMTEVMF RCLIGNMEML KSESQSESTT MVYENDEPS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18421159 | 0.0 | ||||
Genevisible | 246740_at | 1e-176 | ||||
Expression Atlas | AT5G27810 | - | ||||
AtGenExpress | AT5G27810 | - | ||||
ATTED-II | AT5G27810 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G27810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G27810 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC069556 | 0.0 | AC069556.4 Genomic Sequence For Arabidopsis thaliana Clone T1G16 From Chromosome V, complete sequence. | |||
GenBank | BT030070 | 0.0 | BT030070.1 Arabidopsis thaliana At5g27810 gene, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198133.1 | 2e-85 | MADS-box transcription factor family protein | ||||
Swissprot | Q9FJK3 | 2e-61 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | Q3E8Z9 | 4e-84 | Q3E8Z9_ARATH; At5g27810 | ||||
STRING | AT5G27810.1 | 7e-85 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 | Representative plant | OGRP114 | 13 | 173 |
Link Out ? help Back to Top | |
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Phytozome | AT5G27810.1 |
Entrez Gene | 832843 |
iHOP | AT5G27810 |
wikigenes | AT5G27810 |
Publications ? help Back to Top | |||
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