PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002045.1_g000038.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 478aa MW: 52540.4 Da PI: 8.6199

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002045.1_g000038.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.4	7.9e-14	122	171	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++m +R +k+c +rw +yl Rmu_sc0002045.1_g000038.1 122 RQRWQPEEDALLRAYVKQYGPKEWALVSQRMAqpINRDPKSCLERWKNYL 171 89******************************99**********97 PP
2	Myb_DNA-binding	35.3	2.8e-11	177	221	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ ++eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + Rmu_sc0002045.1_g000038.1 177 KGSLSPEEQSLVIQLQAKYGNK-WKKIAAELP-GRTPKRLGKWWEVF 221 57789***************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MFLYALASSG CKKWAAGSGR EASCVLEKLG LGGVGANTNI FHQAVIEVNE DGTTAAAATV 60 AIWVGASAPP PQEIQDFVAD HPFMLFSSEK VVERSLCFCL AGSSSSSSRP TPTKYGAEMK 120 ERQRWQPEED ALLRAYVKQY GPKEWALVSQ RMAQPINRDP KSCLERWKNY LRPGLKKGSL 180 SPEEQSLVIQ LQAKYGNKWK KIAAELPGRT PKRLGKWWEV FREKQLKHKP GSSSAAGASQ 240 ASTAASSSST QPPEGSIPVA AGISSPEKAA QGPYDHILET FAEKYVQPKL YGMMSEPDPL 300 LSLGSAAATP SVLPPWMNPP SATSSTSSTT PSPSVSLSLS PSDPGYDPDP TRVQMGTLVQ 360 WCKEAEEGRQ SWVQHKKEAT WRLSRLEQQL ESEKARKRRE AMEEIEAKIR ALREEEMAFM 420 GRIESDYREQ MSVLQREAES KEAKLVEAWC SKHVKLAKLV DQIGGHGHNN HASHGFTS

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MFLYALASSG CKKWAAGSGR EASCVLEKLG LGGVGANTNI FHQAVIEVNE DGTTAAAATV  60
AIWVGASAPP PQEIQDFVAD HPFMLFSSEK VVERSLCFCL AGSSSSSSRP TPTKYGAEMK  120
ERQRWQPEED ALLRAYVKQY GPKEWALVSQ RMAQPINRDP KSCLERWKNY LRPGLKKGSL  180
SPEEQSLVIQ LQAKYGNKWK KIAAELPGRT PKRLGKWWEV FREKQLKHKP GSSSAAGASQ  240
ASTAASSSST QPPEGSIPVA AGISSPEKAA QGPYDHILET FAEKYVQPKL YGMMSEPDPL  300
LSLGSAAATP SVLPPWMNPP SATSSTSSTT PSPSVSLSLS PSDPGYDPDP TRVQMGTLVQ  360
WCKEAEEGRQ SWVQHKKEAT WRLSRLEQQL ESEKARKRRE AMEEIEAKIR ALREEEMAFM  420
GRIESDYREQ MSVLQREAES KEAKLVEAWC SKHVKLAKLV DQIGGHGHNN HASHGFTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	3e-56	MYB family protein