PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001932.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

ERF

Protein Properties

Length: 458aa MW: 50511.1 Da PI: 5.2642

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001932.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.1	6.6e-11	80	121	12	56
AP2 12 rgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 rg+W+A I+d + r r++l++f aeeAa +++a+ +l+g+ Rmu_sc0001932.1_g000011.1 80 RGKWAAKIHDpV-----RkSRVWLETFQMAEEAAMVYDRAAIQLRGH 121 79******44.....55************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MSADPCAIDT FLPTSLVSIK SNTLSCSARS PNQVILLQNI QKEGDATDTS SDEEEQDQQQ 60 RLTKRVINEV RIEEESEAVR GKWAAKIHDP VRKSRVWLET FQMAEEAAMV YDRAAIQLRG 120 HNAFTNIIAP PSKILIPDHD SSSNESSSIN NLSCSNASNS NDHIVVIDKY DSGKECQSIR 180 SPTSVFSGSD NEWRPGSKEQ DETHFVKDYG YFDGVISPTE AIFLGVTEPI LLEEMNLVPE 240 TMLVTSNSKT QLLNLEQNLF SGGGMGVQLE GKGGVGSEGK SWAVFINGFS PFFPNPLFPP 300 MKNPKKRRAS PPPSKKQKVA DDEIDTDQEG IEQLCDVVSV SGVNLVEEQE HMLLLPGPKM 360 QQASRKLVFQ ENQEGLVLQK IPLQKKLADQ LAWEKRRGKD VNHKVTSTTG RTMNGNVEAE 420 KRGSVEALVS AAGSAVGKFG RNAQVMMILK QKWLVLVV

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MSADPCAIDT FLPTSLVSIK SNTLSCSARS PNQVILLQNI QKEGDATDTS SDEEEQDQQQ  60
RLTKRVINEV RIEEESEAVR GKWAAKIHDP VRKSRVWLET FQMAEEAAMV YDRAAIQLRG  120
HNAFTNIIAP PSKILIPDHD SSSNESSSIN NLSCSNASNS NDHIVVIDKY DSGKECQSIR  180
SPTSVFSGSD NEWRPGSKEQ DETHFVKDYG YFDGVISPTE AIFLGVTEPI LLEEMNLVPE  240
TMLVTSNSKT QLLNLEQNLF SGGGMGVQLE GKGGVGSEGK SWAVFINGFS PFFPNPLFPP  300
MKNPKKRRAS PPPSKKQKVA DDEIDTDQEG IEQLCDVVSV SGVNLVEEQE HMLLLPGPKM  360
QQASRKLVFQ ENQEGLVLQK IPLQKKLADQ LAWEKRRGKD VNHKVTSTTG RTMNGNVEAE  420
KRGSVEALVS AAGSAVGKFG RNAQVMMILK QKWLVLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46310.1	2e-18	ERF family protein