PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001846.1_g000012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 361aa MW: 40495.8 Da PI: 9.9898 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.2e-18 | 22 | 67 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ Rmu_sc0001846.1_g000012.1 22 RGHWRPAEDERLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 67 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 2.9e-18 | 74 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ Rmu_sc0001846.1_g000012.1 74 RRPFSEEEEERLLAAHRIHGNK-WAMIARLFP-GRTDNAVKNHWHV 117 679*******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence |
MDDYGASPAG SADESKSTSC PRGHWRPAED ERLRQLVEQY GAQNWNSIAE KLQGRSGKSC 60 RLRWFNQLDP RINRRPFSEE EEERLLAAHR IHGNKWAMIA RLFPGRTDNA VKNHWHVIMA 120 RRQREQSKLI CGGNKRSYQD FLISSDSISN TSSSISNTFD SRKLKSSTGF DHNQNSTTTS 180 TVFEFRNPGK GRAMSFMESS RPKSSSSHNW NFASMTSSLS IPNSTSSAGF LRGSEISNYK 240 VSECLKGNSD HLFVHRINGQ YSSPAFVYGR YRGSGSSSTF GLPNPRRVNV PINPFGYLSS 300 GTSPLGDIHE QHGSRMILKK EYLRAASSTT FEDHPHPHHD SSIEHNKEVP FIDFLGVGIS 360 S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 2e-62 | MYB family protein |