PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001826.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 783aa    MW: 90144.9 Da    PI: 7.4959
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001826.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.92.2e-2066141190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                +fY  YA ++GF+vr+ + ++s+++g++  r+fvCskeg++++              trtgC a ++v+++++gkw+++ + ++
  Rmu_sc0001826.1_g000003.1  66 EFYTLYAARTGFKVRIGQLYRSRTDGTVSARRFVCSKEGFQTS--------------TRTGCAALIRVQRRDSGKWVIDLFLKN 135
                                6***************************************876..............79************************* PP

                       FAR1  85 HnHela 90 
                                HnH+l 
  Rmu_sc0001826.1_g000003.1 136 HNHDLG 141
                                ***995 PP
2FAR167.34e-21218293190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                +fY++YA+++GF++r+ +  +sk +g+it+r+fvCs+eg++++              +r+gC a +++k++++g+w+v++le++
  Rmu_sc0001826.1_g000003.1 218 QFYHAYAENAGFRIRIGQLFRSKLDGSITSRRFVCSREGFQHP--------------SRVGCGAFMRIKRQESGRWVVDRLEKH 287
                                6***************************************999..............4899*********************** PP

                       FAR1  85 HnHela 90 
                                HnHel 
  Rmu_sc0001826.1_g000003.1 288 HNHELE 293
                                ****96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    
MESSSTHFTD IRSSDTDSKI EECVNNAYPL RMLMPTMNIG STDDEGESIL EPYVGLAFDS  60
ADGAREFYTL YAARTGFKVR IGQLYRSRTD GTVSARRFVC SKEGFQTSTR TGCAALIRVQ  120
RRDSGKWVID LFLKNHNHDL GPTEGNHSLI LQQKILTAKP VEVFHRPKNK LIEEVEDGRP  180
CPSGVITAKR SKPNGDEMQC EVQPSAGLGF NSANEAYQFY HAYAENAGFR IRIGQLFRSK  240
LDGSITSRRF VCSREGFQHP SRVGCGAFMR IKRQESGRWV VDRLEKHHNH ELESQHEVQK  300
KNLSASKKFI EEENGGLDDE DIVDINNGNL VKRRRENHIG SDWYTVLFDY FQTKQAEDTG  360
FFYAVEVDNG SCMSIFWADG RSRFSCSQFG DAIIFDTSYR KGIYLVPFAT FIGINHNRQP  420
VLLGCALIAD ESEMSFTWLF QTWLRAMSGR RPVSIIADQD NAIQEAIIQV FPGTHHRFSM  480
WQIKAKECEH LSSVHSSFHF EYGKCINQSQ TSDEFDTAWN SLLCRYGLKD NTWLKAMYEK  540
RQCWVPLFLR ATFFAGIPLN GNIESFFGTR VNAQTPLTEF VPRYEKGLER RREEELKENF  600
NCSILNAYLQ TKESVEEQCR RLYTLTIFRI FQKELLQSYS YLGFKIDEEV DIVRYLVRKC  660
GNGDDDKSTV TIRVSNHNVG CSCQMFEFEG VLCRHVLRVF QILEIKEVPS RYILRRWRKN  720
AEYGLPPYSE SGGRPQEVNA LMVWSLREEA WKYIEAGATS LEKHRLAYEI LHEGRLRLGC  780
PPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1 family protein