PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0001621.1_g000009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 194aa MW: 21212.4 Da PI: 4.557 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.8 | 3.3e-07 | 37 | 70 | 28 | 57 |
HHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 28 eereeLAkkl....gLterqVkvWFqNrRakekk 57 ++++ + +l +++ ++V++WFqN +a+e++ Rmu_sc0001621.1_g000009.1 37 KQIQGICLHLrpygQIENKNVFFWFQNLKARERQ 70 677888888888889*****************97 PP | |||||||
2 | Wus_type_Homeobox | 54.2 | 3.4e-18 | 36 | 71 | 29 | 64 |
Wus_type_Homeobox 29 keeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++iq i +L+ yG+ie+kNVf+WFQN kaRerqk Rmu_sc0001621.1_g000009.1 36 SKQIQGICLHLRPYGQIENKNVFFWFQNLKARERQK 71 68*********************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence |
MEPRTLQLME LQTQQHMELQ QQQPTEEGGS NQAAGSKQIQ GICLHLRPYG QIENKNVFFW 60 FQNLKARERQ KLKEIRNVRV GGSLDLKFGS TSSTDGGRSI DLNFGSTDST GDDGSIDLTL 120 GLQSFMERRG GDHQEVETLP LFPEHGEDIL GNPKTTSEEV NAFGYYSGGS GGYNSGSPVS 180 LELSLNPFGA ADLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05770.1 | 1e-12 | WOX family protein |