PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G05770.1 | ||||||||
Common Name | WOX5A, WOX7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WOX | ||||||||
Protein Properties | Length: 122aa MW: 13997 Da PI: 11.109 | ||||||||
Description | WUSCHEL related homeobox 7 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.8 | 2.5e-20 | 26 | 87 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t eq++ L +lF+ r+ps++++++++++l +++ ++V++WFqN++a+e++ AT5G05770.1 26 KCGRWNPTVEQVKLLTDLFKAgLRTPSTDQIQKISMELsfygKIESKNVFYWFQNHKARERQ 87 568*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 113.4 | 1.1e-36 | 26 | 88 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++ RW+Pt eQ+k+L++l+k+GlrtP++++iq+i++eL+ yGkie+kNVfyWFQN+kaRerqk AT5G05770.1 26 KCGRWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQNHKARERQK 88 578***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.527 | 23 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.2E-4 | 25 | 92 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.72E-11 | 25 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.3E-17 | 27 | 87 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-8 | 29 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 0.00124 | 29 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000060 | anatomy | root cortex-endodermis initial cell | ||||
PO:0020127 | anatomy | primary root |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MSSRGFNIKA RGLCNNNNGG GGTGAKCGRW NPTVEQVKLL TDLFKAGLRT PSTDQIQKIS 60 MELSFYGKIE SKNVFYWFQN HKARERQKCR KISTVKFDHR QDTDLSKPRR DNVRRHQLPA 120 KG |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT5G05770 | |||||
AtGenExpress | AT5G05770 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. | |||||
UniProt | Potential transcription factor that plays a central role during developmental processes. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G05770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G05770 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005237 | 0.0 | AB005237.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJJ3. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_196196.1 | 4e-88 | WUSCHEL related homeobox 7 | ||||
Swissprot | Q9FFK0 | 4e-89 | WOX7_ARATH; WUSCHEL-related homeobox 7 | ||||
TrEMBL | A0A089VA62 | 2e-86 | A0A089VA62_ARATH; WOX7 | ||||
STRING | AT5G05770.1 | 2e-87 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4014 | 28 | 57 | Representative plant | OGRP8406 | 11 | 16 |
Link Out ? help Back to Top | |
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Phytozome | AT5G05770.1 |
Entrez Gene | 830462 |
iHOP | AT5G05770 |
wikigenes | AT5G05770 |