PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001541.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 447aa MW: 50521.5 Da PI: 7.1876

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001541.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.5	1.1e-23	54	138	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +fYn Y+ke GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++k+ ++++w++ +lel+ Rmu_sc0001541.1_g000005.1 54 DFYNVYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIKLVDSQRWRIVELELQ 132 6*******************999*************99888.....9*************************** PP FAR1 85 HnHela 90 HnH+++ Rmu_sc0001541.1_g000005.1 133 HNHQVS 138 *987 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MEEVCLNSEP VFDEGDEYDL EGGHAVGIGE TKSKQVPPQP TVGLEFDSFD EAYDFYNVYG 60 KEQGFGIRVS NSWFRSKRKE RYRAKLSCSS AGFKKKSEAN NPRPETRTGC PAMIVIKLVD 120 SQRWRIVELE LQHNHQVSPQ IKRFYKSHKK MIVAAKNAQP QPNPVTEVHT IKLYRTPVMD 180 VGCNGCSTLS ETEGLNPIDH SKHLQLREGD AHAVYNYFCR MKLTNPNFYY LMDLDDDGRL 240 RNVFWADARS RAAYGYFCDT VAIDTTCLAN KYELPLISFV GVNHHGQSVL LGCGFLGVES 300 VDCYVWMLGA WLKCMLGRPP QVFITDQCKP LQIAVSEVIP EARHCYCLSY IMQRVPEKLG 360 GLKGYEAIKR HLQKSIYVDV EDVAILGVRD VGVAVAGDLL ENLARDGGGV GRRGAELGEH 420 HRSPRHESVE YRHRCRNDVV FGSQLEF

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MEEVCLNSEP VFDEGDEYDL EGGHAVGIGE TKSKQVPPQP TVGLEFDSFD EAYDFYNVYG  60
KEQGFGIRVS NSWFRSKRKE RYRAKLSCSS AGFKKKSEAN NPRPETRTGC PAMIVIKLVD  120
SQRWRIVELE LQHNHQVSPQ IKRFYKSHKK MIVAAKNAQP QPNPVTEVHT IKLYRTPVMD  180
VGCNGCSTLS ETEGLNPIDH SKHLQLREGD AHAVYNYFCR MKLTNPNFYY LMDLDDDGRL  240
RNVFWADARS RAAYGYFCDT VAIDTTCLAN KYELPLISFV GVNHHGQSVL LGCGFLGVES  300
VDCYVWMLGA WLKCMLGRPP QVFITDQCKP LQIAVSEVIP EARHCYCLSY IMQRVPEKLG  360
GLKGYEAIKR HLQKSIYVDV EDVAILGVRD VGVAVAGDLL ENLARDGGGV GRRGAELGEH  420
HRSPRHESVE YRHRCRNDVV FGSQLEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-118	FAR1 family protein