PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001405.1_g000041.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 550aa MW: 59513 Da PI: 7.4606

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001405.1_g000041.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.6	4.6e-11	190	246	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g Rmu_sc0001405.1_g000041.1 190 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 246 57*****************5444.2455535555.7799999***********98 PP
2	AP2	47.1	5.9e-15	289	340	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Rmu_sc0001405.1_g000041.1 289 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 340 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MDSNSPPHHH HPQNWLGFSL SNHFSSPPHN SHLSLFEAFT SSPDAGVNSA ASDHHQDAHA 60 GATETDLSIF SGVAPKLEDF LGGGCTTTTT AGVATATADV ITTASVTPTS LTAFSSTNDH 120 LAVSENEIYD SELKTIAASF LRGFSTAPIA TATATTTLQH TKPQIHNHPV GTTETATIKK 180 TVDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQGGYDKE DKAARAYDLA 240 ALKYWGPTTT TNFPVTNYEK ELAGMKNMSR QEFVASLRRK SSGFSRGASI YRGVTRHHQH 300 GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSIANS 360 NLPIGGMSGK SKNSSDQSLS ADSKSLDDRD LSSASSVTFA SSSHQPSNSS TLSFAIPIKQ 420 DPSSEYWSNI FGYHVPNNNP SLNNVRNPNS VGIAPTYFHS NMDFSATSST ATTTSETNNG 480 LFYSGGYNVH GQQQQQQQQQ STSSGTNNSI PFSTPLGLSS NMGYDQGSSG YGTWIGPSLN 540 LFQTPIFGME

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MDSNSPPHHH HPQNWLGFSL SNHFSSPPHN SHLSLFEAFT SSPDAGVNSA ASDHHQDAHA  60
GATETDLSIF SGVAPKLEDF LGGGCTTTTT AGVATATADV ITTASVTPTS LTAFSSTNDH  120
LAVSENEIYD SELKTIAASF LRGFSTAPIA TATATTTLQH TKPQIHNHPV GTTETATIKK  180
TVDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQGGYDKE DKAARAYDLA  240
ALKYWGPTTT TNFPVTNYEK ELAGMKNMSR QEFVASLRRK SSGFSRGASI YRGVTRHHQH  300
GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSIANS  360
NLPIGGMSGK SKNSSDQSLS ADSKSLDDRD LSSASSVTFA SSSHQPSNSS TLSFAIPIKQ  420
DPSSEYWSNI FGYHVPNNNP SLNNVRNPNS VGIAPTYFHS NMDFSATSST ATTTSETNNG  480
LFYSGGYNVH GQQQQQQQQQ STSSGTNNSI PFSTPLGLSS NMGYDQGSSG YGTWIGPSLN  540
LFQTPIFGME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-134	AP2 family protein